RnoINT0055473 @ rn6
Intron Retention
Gene
ENSRNOG00000029447 | Epc2
Description
enhancer of polycomb homolog 2 [Source:RGD Symbol;Acc:1307271]
Coordinates
chr3:33726773-33727366:+
Coord C1 exon
chr3:33726773-33726921
Coord A exon
chr3:33726922-33727022
Coord C2 exon
chr3:33727023-33727366
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TCCCTTATATTGTTTTACAGGGT
3' ss Score
10.55
Exon sequences
Seq C1 exon
CCGCGTTTGGACCAAGCTAATAACCATCCGTGTGAAAGTTCAGAGTTGGCAGACTTGGATAAGTTGAGGTATAAGCATTGTCTCACAACACTTACAGTTCCAAGAAGATGTATAGGGTTTGCCAGGAGGCGAATTGGCAGGGGTGGAAG
Seq A exon
GTAAGCTGCTGTGATCTTGGTATCATTTTCTAGCTGAAAGGGAATCAATAGAGAAACAGTTGTTTATGATATACACATGTATCCCTTATATTGTTTTACAG
Seq C2 exon
GGTCATAATGGACCGAATATCCACAGAACATGACCCCGTCCTAAAACAGATAGACCCTGAGATGCTGAATGGGCTTTCAAGCTCTTCCCAAACTATAGACTTTTCTTCTAATTTCTCTCGGACCAATGCTTCCAGTAAACCTTGTGAAAATAGACTGTCCCTTTCTGAAATATTAAGCAATATCAGATCATGTCGACTACAGTGTTTCCAGCCAAGGCTACTAAATGTACAGGACATTGATAGTGAAGAATGTACCTCAAGAAAACCAGGGCAGACTGTGAGCAGTAAAAGGGTTTCTGCAGCATCTGTAGCTTTATTGAACACCAGCAAGAACGGCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029447:ENSRNOT00000051953:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGAGTTGGCAGACTTGG
R:
TGGAAGCATTGGTCCGAGAGA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]