GgaINT0050587 @ galGal3
Intron Retention
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36380820-36381412:+
Coord C1 exon
chr7:36380820-36380965
Coord A exon
chr7:36380966-36381068
Coord C2 exon
chr7:36381069-36381412
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
TTTCCATCTTTTAAAATCAGGGT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CCTCGTTTGGACCAAACTAATTCTTCATATGAAAATTCAGAATTGGCAGAATTGGACAAACTGAGGTTCAGGCATTGCCTTACAACCCTTACAATTCCAAGAAGGTGTATAGGATTTGCAAGAAGACGAGTTGGCAGGGGTGGAAG
Seq A exon
GTACGATTGCATTATTTTTACTCTTTGTTTCCCTTCAAAGTATAAAAGCATGTATATAAGAGACATAATTAACATCTTTTTTTTTTCCATCTTTTAAAATCAG
Seq C2 exon
GGTTATAATGGACCGAATATCCACAGAACATGATCCTGTCTTGAGACAGATTGACCCGGAAATGCTGAATAGTTTTTCAAGCTCTTCCCAGACTTTAGACTTTTCTTCTAATTTTTCACGGACCAATGCTTCCAATAAACGTTGTGAAAACAGACTGTCCCTTTCTGAAATACTAAGCAATATCAGATCATGTCGACTGCAGTGTTTTCAGCCAAGGCTACTAAATCTACAGGACAGCGATAGTGAAGAATGTACCTCAAGGAAACCAGGGCAGACTGTGAATAATAAAAGAGTTTCTGCAGCATCTGTAGCTTTATTGAACACCAGCAAGAATGGCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453:ENSGALT00000020355:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAAGACGAGTTGGCAG
R:
GGCTGAAAACACTGCAGTCGA
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]