MmuINT0059523 @ mm9
Intron Retention
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:108241377-108242625:-
Coord C1 exon
chr5:108242565-108242625
Coord A exon
chr5:108241431-108242564
Coord C2 exon
chr5:108241377-108241430
Length
1134 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
ACTTTCTTTTTCCTTGGCAGAGG
3' ss Score
9.89
Exon sequences
Seq C1 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAACAAGGTGAAATTAAA
Seq A exon
GTAAGCATTACAGGGCTTTTCAAATAGCTAAGATAAATTTTTTTTTAGCCAGAAATTTGGCAGTAAAGAAATTTGGCCGGGTGTGGTGGCGCACACCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAATGTGTGACTGAAGTTGCTCTCCGTCTTGTGTGAGAAGAAATAGCTCTTTCCCTGCCTTGACCTGCTCCTCCACAGAAGAAAACATAGCTGTGGAAACTGCATTCTTCTGAAACATTTGTAAAACTTGCTGAGAAAGTGTTTGCTGTGTTGTGCAGTTGAGAGCAGAGTGATTTGAGGTTGGTGGTACAGAACAAAGGCTGAGCTAGTTGGGCCTATTGTAGCATGGCAGCATTCCTTGGCCAGTATAAATTTATAGACTTTAAGGCTTTTTATGCTGTGGTATTTGTAATATGAATGGAAATTGGTATAGTTTAAGCAACAATTTGACATTTTCCCTATGAACATTTGTATTTAAAGTTTTGAATACCAGTTATGTTGTTAGTATCTGTAGGAGACAAGAGATGTTAGAATAAGAATATTATAAGCTAGAATGGAGATAAGGCTCAGCGGATAAGGGCACTGGCTGCTTTTCTAGAGGACCAGGGCTCAAACCCCTGCACCCACATGGTGCTCTTAACTGTCTGTATCTCCATTTCCCAGGGGATCCAGCACATTCTTTAGAAGTCCTTGGATACTATACACATGTGGTGCACAAATATACATTCAGTCAAAACTCATACCCAGAAAATTAAAATAAATCTAAAGAGAAAAAGTATAAGCCATTATAAATGGAGGAAACCAAGGCTGCATATTTATTACGTTTTATGTGTAGAGTTGCGTCTCAGTGAGAATGACCACTCTGATTGTTTCCTTTGCCCTGCCTTCTTACTCGTTGTGTGATAATAAACAGTTCCTTACAGCCATTCCTTATAAAAGGTGCCACACTCTCAACACCACTACTTAGGGATCTGCTGTTTTCTCTCTCAAGAGTCCTTGTAAACAAACTTTCTTTTTCCTTGGCAG
Seq C2 exon
AGGCTACGCACAGAAAATAGGCTTTTAAAACAGCGCATTGAAACATTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-Evi5:NM_007964:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(18.2=100)
A:
NA
C2:
PF138511=GAS=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: