DreINT0065059 @ danRer10
Intron Retention
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29051687-29052481:-
Coord C1 exon
chr6:29052421-29052481
Coord A exon
chr6:29051741-29052420
Coord C2 exon
chr6:29051687-29051740
Length
680 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTGACACTTTTTGTTTCAGAGA
3' ss Score
8.72
Exon sequences
Seq C1 exon
ATTGGAAAAGGAGTACACTACAATCAAAACAAAGGAGATGGAGGAACAGGTGGAGATCAAG
Seq A exon
GTGAGATGACAATTCAACACAGTGTTACCTCTTCAAATACTTTTGTATTGTTATGTAATATAGACATTTTTGAGATACATACTGTCTCTATTGTTACTGCACAATTGCAATGGTTTGACATGTGGCATTCATGTGCATGTTTAGCAACAAAGTTCAGTCCATAAAAATAGAAAGATATTCTGAAGATATTAAAGCATTTAAAGCAACGTTTTTATTCCATTAATAAAATTAAATGATGTCATGTAATTTGCGACAAACTTGGGAAGGTTATGTGATGCTCTCCACATGTAGTGAAACTATGGAGCGAAACTGATGGCAAAATGGGAAAATTTAAGTTTGTGTACTGCTGGTTGGAGAAACCTGACGCTAAAAACAACCACGTAATTTATTCTTTCAAGCTTTTGTTTCTTCCGAGCCTATCTGAGTTCTGTTGCATGGTTGTGCTCCATTCATTTATTTAACTACAGCTGTTAATTAGCAACTTTTTATTAGGTGAAAAGTTTGATACTGATTAGAACTTGAAGTGGCGATAAGGTCTTAAAATATTCTGAGTACTTATTTTAAAAGTTTTAAAAAGGTATTGAAATTACCTTTAGGATTCCTGCATATACCCTGTGTAAACAATGTTGTTTTGATGTATTGCAGTCTAGCATTTTCAATACTGACACTTTTTGTTTCAG
Seq C2 exon
AGACTACGCACAGAAAACAGACTTCTGAAGCAGCGAATAGACACTCTGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839:ENSDART00000124947:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(17.9=100)
A:
NA
C2:
PF138511=GAS=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]