MmuINT0059528 @ mm9
Intron Retention
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:108217218-108219527:-
Coord C1 exon
chr5:108219381-108219527
Coord A exon
chr5:108217314-108219380
Coord C2 exon
chr5:108217218-108217313
Length
2067 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTCTTGTTTGCTGCTGTAGAAC
3' ss Score
7.86
Exon sequences
Seq C1 exon
AACCAGATCAATAGTAACCAACTTCGAAGAGCGGAGCAAGAGGTGAACAGTCTGCAGGAGAAGGTGTGCTCGCTGTCTGTGAAGAACAAGGGCTTGCTTGCCCAGTTAAGTGAGGCAAAGCGCAGACAGGCAGAGATTGAATGCAAG
Seq A exon
GTGAGTGTCAGTGCAGTAGGGCTTTATACATTTATCAGGATTGGGTTTTGTGGTTTTGTTTTGTTTGTTTTTGAAAACAGACTTTGAATATATAGCCCTGGCTAGCCTGGATTTTGCTTTATAGACCAAACTGGCTTCAAAATCCCATTGATTCTTTTACCTCTGTCTCTTATTGCTGGGATCACAGGCATGTGCCACACCCAGAGTAAATTTTCCTTCTTTTTTCCTGGTCTTGTTTTAGTGGTTGTTCTCAGACAAGGTTAGCTCATTTTGTTCAGAGGGTAAGTTTCAGGGAGGAAACCTCAGTTTTAACCTTAACCTTGATTAAGTTAATGTCTTAACTAATGCTCCTTTGTGATGTGCCTTTTGAGGGTTAGCCCTTTAAAATGCAGCTTGTAATGGCTCACCTGAAAATGCAGGTAATTGCAGAGGTTGAAGTTCCTCCCTTGACTCATCATATTAGCAGGCAGGCAGTCACAACTAATGTTTTTGTGTAACAGAGAGAGCAGGAGAAATGTATGTGCGCAAGTGGGTTAAGAAAAATGAGCACAATTTCTGTTAAGCTTTCAAAATAAATTGCATTAAAATAAATTCCTTTTTTATGAAAGGAACTTAAGTAGCTTTAGGTAATGAGGACAGTTGGCTGGCGCCATCAAGTGGAGAACAGCACGGACACACACGCACAAGTGTGTGTGAAAATCACTAAAGAGATGCATGCCATCTGAGGCCTAGTGCGGATTCCTGAAGGGAAGTTGTGAAACTTTTAACAGAAAGTACTAATCTCCTTAGCAGATGGTAGGTCTCATATATGCAAGCTTTATTATTCTATGAAAAATAAGACTTTCAGTGGCACATATAAAGCTGTAATTCCATCAACTCGTCCTGGTGTCATTAAAACCAAGAGTGAAGCTTGAGTGGTTTATCAGTGTCATTGAAATCCAGAGATGAAATTACATCCTAATCAATATTCATGGCCGTTAGAATTTAGACTGAAGAAATCTGTAGGCAGCAGTAGAATTGTACTAACTTGAAGAATTGACCCTTTCTAAATTGCAACTGGATTCATTTAGAAATAAGGTAGTGCACAGTGAGGTTACGTCCCTGTGACTTGTCACAGTGGTAGCTGGCAGACCGTAATGCCACATTGCCCTTGCCGATTCATCATTAACAGAGTATTAAATTTAATTTTCTCTATATGGATGTCAGTTTTCTTTAAACATTTTGGTAACAGTGTTTCTGAATTTAATATTGTTTTAGCACCTGTTAGCAAAATAAAAAAAAATGTTCAGTTATGAAGATACTTGTTTTGAATTTTTCTAAGTAATGAATAAAGACTCAGAAAAGGAGACTCGGCAGATGGATACAGGATTTTTTTCTTAGTTTTTATTTGTTCATCTTTGCCTTGTGAAGTACACTGAGGACACTAGCTCTGATATACCCTTGTGTGCGAGCTCTAAGTTGATTCAGCCTTCTCTATTGCCTTTTGCAGATCTTGGAATTAATGTTAGTGTATTAATTGTCATTCTGACACCCAGTAACCTGTTTATTTCCCTTGTTAAAGTGTAACAATTCCATAAGAACTGTAACTTTTCAAGGAAGCCAGTCCCTTAGTTATATAGGTAGATTCATTTTCATTAAGGTTTTTTGTGATTAAGGCTTATGATTTGTCTTTGAGTAATCTTTAAAGCTCATTTTTCACTTATATAAAGTATCTGGATAGTATTTGTATTAACATTATTTTCACTCTACTCGAATATCAAAATTAATTTGAATATTCTCACTTTAAATAGTAAAAGCCTATAATTCCCAGTTTTACAATCCCGAACACCTGAATCACAAAAGTTTTTTCTTAAATTTTACACAGGTTCATTTGGAGGCAGAACCTGATCTGAATTGATAAATGGCCACTTCTAAGTTGTTTTTGTCCTGTTTGTTGTGGTTGTTTATACCAGGCTGCTCAGACACTGCTGGGTAATGCTAATGTGCAGTTTATACACCTTAATATTTTGAAAATGCTTGCTTTTTGAACTCACCTGTTTTGTTGCTGTGTCTTGTTTGCTGCTGTAG
Seq C2 exon
AACAAGGAGGAAGTCATGGCTGTGCGGCTCCGGGAAGCTGATAGCATCGCGGCCGTGGCTGAGCTGCAGCAGCACATTGCTGAGCTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-Evi5:NM_007964:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: