GgaINT0039476 @ galGal3
Intron Retention
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14789994-14794530:+
Coord C1 exon
chr8:14789994-14790140
Coord A exon
chr8:14790141-14794434
Coord C2 exon
chr8:14794435-14794530
Length
4294 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TAATTTATTCTTCCTTCTAGAGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
AGTCAGATCAATAATAACCATTTGCGAAGGGCAGAGCTGGAGGTCACCAGCCTGCAGGAAAAGGTACAGTATCTTACTGCACAGAACAAAGGACTTCTTGCTCAGCTGAATGAAGCAAAACGTAGACAAGCGGAGATTGAATGTAAG
Seq A exon
GTAAACAACATGAATAGACTATTTGTATGCTTCTGTATGTGAAATTTGTAGTATTTTCCTCTGCTTTATTTTCCAGTTTGACAATGTCATCTTGGACTTACCATCTCAAAATCATTTGAGGTTTTGACAGAGCTGTTTCTTTGTGGTCTCACAAAGATAAACTTCAACTTCAAAGTGTGATTCTGCTTTACTCTCTACTACTGTCTGTGTGTAATGAGTAAAAAGACGCTCTTTTACTCAACAGATTCTGATCACTGTGTGCTCTGATTGTCTTAGTGACGGAAGACAGCTTCAATGCTATTACTGCAGAACTGGCTTGGCTTCAAAAATGGCAGTAAAAACTGTCATTGAATGGAAATGTGTACTGAGAAGAGTGTTAGGGTGTTCACTACCTAAATAATAAACAGCTTTTAAGAGATCAGCTTAAAAATACTGGGCAGGAAAGTGTTCGTTACCGTCAGTTCACCAGAGCTCTACCTGATGTTTTCATCTCAGACTAAGCTAATTTCATAACCAAATAGATAACCAATCCCTAGTAATTTATTTCAGTCATGTGCATGCGATATGGAAAAGCAATAAAGGATTAGTCCTAAAAGGTTTTCTTTTAACTTGAATGAAACTTTTCCTGAAATGACTACTGATACTTATCATGAAAAAGTGCAGTGTTAGTTAGGAAATCGCTATAATTAAGATTTAACGTACTGGAGACATTAAAATAACTTTCAACTTCACTCTATTTCCAAAAGATGTTTGCAGAGGTTTTTATAAAATTAGCTAAAGCTGAGTGGCCAGTAATTTTCAAATAGGTAAATTGTTAGTGTGTTAACATTCATCCTGTAACACAGTGAATTCCACTTATTGGACTGTGGTTGCAGATTTAGCAACTTGAGAGCAGATGCTGTTACGTAATGGAAGTTGATCATATCTTAGTTATGTCCATGATGTATTCAGACATCTTTGTTTCTGTCTTTTGCTCATAAAGAACGCAGTTACCAGCTGGGTGTTTATTTCACGTTCTTTCTGATGTACATGTATTTTATTTTAACAATATATAACTTAAGGGATGGCTGTATTCCTCTCTAAAGGTTCTGCTGATAACATGAATCAAGAATGTATCTTGAGTGGCTTCTCACTGTTGCTAAATCTGGGGGTGAATCGGCACTCCATGCATAATTTTGCTATAATGTTTTTACAGACTTGATTTCTTCTTGTAATTCATTTTCTTCAAGGTAATACATAAATGTTATCAATTCAGTTCTGTAGTACAATTTTATCTTGTATTCATTACTCAAAGCCATATTGTGTGATCTGTAATTGGCAGCTTTTCGCTAGTTTTCCCTTAATTCTTTCCATAAGGAAAATGAAGCTGCTGGTTGTTCAATTCCGTTTTTAACAAATTTAAGAACAGTGAATAACTTGGACATACTCGAGTTACTCTCTTAAAGTATTTCAGTTTTTTGTTAGGTTTTCATGTCTTAAATGGAACTTGAATCTTCGTGCAGCAAAGATGTAAATTCTACTGACTGTTTTGCAAAGCTTGTAGGAAACAAATCGCTCCTCATAATCACTTCTGTCAATTGTTTTTTTAGCATAATCGCTGCTTTTGAAAGCTATTTTTGTGATGCTGAAGTTATTTTTTTGATCTATTTCATTTTATATTCACATCCTGGTAATGTCTTTGTATATTCTGTAACTTTGGACTGCTTTTTCATACTAAAGGTCCTTGTTAATGCTTGACATTGTGTGGGTATAGGCAATGTTTTGAAGGTTTTTTTTTCCTATAGAAGTAGTAGTACATCTTTAACCTGGCTAATGACCATTACCACCTTCTGTACAAATGATCATAGGTTGTAACCCGGATTAGGGAAAGTTGTGCTAGTAAGTGTTGTCAACTGAATTCAAGGGGCAGATTTCTTTTTTTTAAGAGATTCTCTGAAAATAGCAGTTCTCAGTGACTGAAGTACCTCTGAATATGAATGCAATGAAGCAAGTTCCTGCTTAGGATTGTTTAAGGTTATTTCACTACAAGGGAAATTTTAATTTTGAAGAGATGTGAAGTAAAAACTGAAGTAGAAGGAAGCACTGTTATGGTCATCAAGCTAAAACCTTGCGATGTTACTTCCTTTCTTGTATTAACTGGGATACATAGGCTTTACAATTTGTAAACCATTGATTACTCTGTTAGGAGATGCAAGTGTGAAGGATTGACCTACAGCAGTACTAACACTTGTCTTACCTTCTGTCCTACCAGAAGTAGCTTCAGTGTCTGTCTCTTTACTAAGTAGTGTGGCTACTGACTTCATTTGGCTTGAAATATAGAGTATAGAGTAGGTTGAATTAGGAGAAAAAAAGTTTTGCTCTGTAAATACTGAAAATAGTTAAAATAATTAAGATGTCACGCAACAACTTCATAAACAAAACTGAAGTCTCAGTGGTCTTTCATATAATATTATGGAGCAATACGAATGTTAAGCTTATGTAGCACTAAGTATTTTAAGCTACATTTGCATTTTCTTAGGCCTGTTAAGTTTTTTTTTAATCCTGATTCCCCTGGAAACTGATGTTTGAATATTTTTTCTCTTCCTGTTATTTCAAGACCTCTGAAGCCATACTCTAGTGTTGTTTGTCACTACAACTTGCTACATAGCAATATTTGTACTTTAAAATCCAAGTAAGTATTTCTAACACATCTTCAACTCCCCAGTTGTCCTGTGTAAAACAAACGAAAAACCTACCTAGTATGTTCTGGAGCTTGTCTTTTTTGAAACAGTATCTTAAAATACTCAAGTAGAAATTAAAACTTGTGTAGCAAGTTGCATCTCATAGTACCTATGCAGTTACTGTTTTCTGTCACTGGTGTGTACTGTTATGGCTTTTTTTCTTTTTATCAGATTGCTACCCCTACAGCCAGGACTTCATTTCAAACTGTTTCTTGAAACACAGCAATAATCTCTCTAATCAGTTGTGTTAAAGAGCTTACAACGTAAGAGCTGTGTCCTCACCCCAATCGTCTTTCCTATCAACTCCTGTGGTATTTATTGAGCACATGCCTTGTTTCAGTGATAAAGTGTCAGTGCCATCTAGAGCAACGCTATTGACTCATCTCAGATATTCAAGTCAAACCAAGCCAAAGACAATCACTTAGCTTGCAGATGACTACATGTGATCCTATAGACTTGTGGGCTTGGCTTCATGCAGGCAGTCACACAGTAGAATTTAGCAGTAATGGCTAAGCTTTGACTTTGGGTTCCTCTAAAATGGAATTAGCTGACTACAAATTCTGTTAATTAGATACTGCAGAAAATGCCATTTCAGTACAGGGCTCTTTTTGAAAACATACAGCATCTCTTCAAGTAGCTACTGTGGATAAGTTTTGGCGTGTTAAATTCAGTTTCAATCATTGTCTAAAAATTAAGAATAGCTAAGTGTTGTCAATTTGAAGCACACATGAAATGAATTACACATAAAAATAACTGTGATACTTTAACTAACCTACAGTAACTGTAGTTTGTGGAGTTCCACCATTCTGCCATAAAAGTTGTACCTGGGACTCACCTGTCTCTTTTCCAGAAGTTGCACTCTACCTGGAAGTATTATTGACTCATTATCTATCCCTTTTTTGTCTGCGGTTGTACCAAGCTGGTGACAATAGAACACCGGTAGACTTGTGTTCTCGAGTCTTCAGGGCTTACTTCATAAAACAGAAAGTAGGGAAACTTCCTTCTCTTGTCAAAACTTAAATTGCGAATCACTGTTAAACTTACAGCAGGAATCTGTTCATTAGTTACAGGCATTAGAGTTTTATTCTAAATGGTGTTGGATGTTTTTGTTCTATACTGTCACCAATATAGCTGAACATAAGTGAGGTGGAGTATCTCTCTTCTTACTTGTCTTTTAGAGAACGGTGAAATAACAAAATAAGTAATTTCAGTGTATTAACAAAAGCAGAAGCTGAAGAATGTGGACTTCTGTTATTAGCTTGTTGATACTTTTTTCCTTCATTTACATTATAGTGTTTCTGGAGCAAAATGTATCTGTGTCTTGGACCTGGACATATTTTTCATGGGTATTAAGTGGTTGTAGTTTGGAATTAGTATTAGATGTTTACAGAATTCCATGGGCTATAAAAAAAAAAATAATAATAAAATTGGGGGGTTCTCTGGAATATACTTTATCGGTAGGCATGGTATTCTTCAGCAGCATAAGTTCTTTGTGTAGTTCTGAGTAAACAATGCACAGTCATTGATTTGAAACTGGTATTATGGGTTATCTTTTAATTTATTCTTCCTTCTAG
Seq C2 exon
AGTAAAGAAGAAGTGATGGCAGCACGGCTCCGTGAGGCAGACAGCATAGCAGCTGTGGCTGAACTCCAGCAGCACATTGCTGAATTAGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935:ENSGALT00000009552:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]