HsaINT0058452 @ hg19
Intron Retention
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93070864-93073284:-
Coord C1 exon
chr1:93073138-93073284
Coord A exon
chr1:93070960-93073137
Coord C2 exon
chr1:93070864-93070959
Length
2178 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GGTTTGGTTTACCACACTAGAAT
3' ss Score
2.4
Exon sequences
Seq C1 exon
AACCAGATCAATAGTAACCATCTTCGAAGAGCAGAACAAGAGGTGATTAGCCTACAGGAGAAAGTGCAGTATCTTTCTGCACAGAACAAAGGACTCCTTACTCAATTAAGTGAAGCAAAGCGTAAACAAGCAGAGATTGAATGCAAG
Seq A exon
GTAAATATGTCAACTAACTGATTTTGTTTTTTGTCAATATAATAATGCCTTTTTTTTGTTTGTTTTATCGTGATTAGATTATCTTAAAAACAAAACAAAAAAGCTCGTCCTATTTTCTACTTTTCCTGAACTTGTTTTGGTAGTTGCTTTCAGACCAGGTCAGCTCATCTTGCTTCTGGGGTGGATTTTAGTCAAGAAACATTTTCAGTCACTTCCTTGGTTAATTTAATTTCCTGGATTGGCATTTACTAGTATTTCTTTACAGTTTTTCTTTTGACTGGTAACCCTTTAAAACCAGAGCTTTTAATGGCTTGATCAAAAAAGATGGGTCATTTAGAGAGGTTAGGGCTCCTCTGCTTTGATTGGTATCTTATTAGTGGGCAGTAATGTTAATAACATTGATACATGTTTTCTGGATAGACTAGAGAGCAAAAGAAATGTGTATGTACCAGTGTGTTGGGAAAAATGGGTATATTACCCATTATTATTTTAATCAGTTATATACTTTACTTTTTTGTGAAGTGTTTGGATTCAAAAAGCATCAAAAGTATTTGAATGCAAGTACATTCTTTCCTGAAATAAATTTACAATATAGCAGTGGTGAGAGAGTGGGGGAAAGGCAGTGAGATGGAAGGAGAGGAGGGAGGGTTTGGGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATAACTAAAGAGATGACTGTAGACTGGGCATTAGAATGGATTACTAAAGGCAAGTTATGGGATTTAAAAAAATAAACTAGGCATCCACCTTTCCATGGTGAGATAGTAGGAATGATGCCCTTTAAAGATTCCAGCCTTATTATTGTATAAGAAATAAGACTTTTGATGGCACATGTAAAGCTGTAATTCCATCAGCTTATTCTGGTGACATTAAAAACCAAGAGTGAAGCTTGAATGGTTTATCAGTGTCACTGAAATCCAGAGATGAAATTACATCCTTATAAATATGCATGGCTGTTACAATGTATACTGACAGAAATCTGTAGGCAGTACTGAAATTCCTACTAAAAGCACAGTCACTTTTGAAGGATATGACTAAACTATAAATAAAATAATATTAAATGAGGTTGTATCAGTCTGATTTGTCATACCAATATCTGATTGAGTTTTTATGATGCTAAATTGTCTGTGTTGACATCTTATAGATAACTAAATTTAATCTTTTATTTATTATTGGTGTTAGTTTTCCTTAAACATATTTTGATAATGGTGTTACTAGATTAAATATTGCTCCTCAAATGCCTTAGTACCTGTTGAGCAAAGTAAAGTGTTCTTTGGAAATAAATCTTTGAGGAACTTGCTGTTGAAAATAATAATTTTCTTTGAACTTGTCTAAGTAATGGGCTCAGATTTAGAATATTAGAGGATTTTATGAACTAATATGGGATTTTATTTAATTTTTAATTGTTCATTAATACCTCTGTGAAGTATGTTACAGATGCAAACTCTGATATCTCCCCTGTGTTTAAGCTGTGTGTTAATTTATTCAATCTTTCGTGATGCCTTTGCAGGTTTTGAGAATGACCAATGTATTGTTACCCTAGCACCTAGTACATTCTGATTAAATGTGTATGTTTTACCCTGTTATGTTGGAATAATTCGGGAACAAAGTTAATTTTTCAAGAAAGCCAGTCCGTGAATTATGTAAATCTGATTCATTTTCATTTAGTATTATAATATTATAGCTTATGATTAATTTATAATTATTAAAGCTTTTTTATTTTTAGTTGTGTAAAATGTGTGGATATTGTTTATAATATTAATGTTATTTTCCCTCTCAACTTAATTTGAATGTTCTCACTTAAAGTTGAAATATTACAAGCCTGTGAACCCCAGTTTCAAAATGCAAAACACTCTAAAACCCTGGAGTTTTTTCATAAATTTCACACAAATTCCTTTGGAGGCAAAACTTAATTTGAATTGATATATGGCCATTTATAATTGTTATTTATTCCACTTGATGTGAACATTTATATCTCACTGCTTCGTTGTATGTATTGAGCATATTGTTTCATTATGGATGCTGCCTTAGACCCTGCTAGATAATACTTAACGTATGGTTTATGCAACCTATTACTTTTCTAAAATCTGAATTCCAAACACACCTGGTTTATTTTGTTTCGGTTTGGTTTACCACACTAG
Seq C2 exon
AATAAGGAAGAAGTGATGGCTGTGAGGCTTCGGGAAGCAGATAGCATAGCTGCTGTGGCTGAACTACGACAACACATTGCTGAGCTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-EVI5:NM_005665:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)