HsaINT0058452 @ hg38
Intron Retention
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92605307-92607727:-
Coord C1 exon
chr1:92607581-92607727
Coord A exon
chr1:92605403-92607580
Coord C2 exon
chr1:92605307-92605402
Length
2178 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GGTTTGGTTTACCACACTAGAAT
3' ss Score
2.4
Exon sequences
Seq C1 exon
AACCAGATCAATAGTAACCATCTTCGAAGAGCAGAACAAGAGGTGATTAGCCTACAGGAGAAAGTGCAGTATCTTTCTGCACAGAACAAAGGACTCCTTACTCAATTAAGTGAAGCAAAGCGTAAACAAGCAGAGATTGAATGCAAG
Seq A exon
GTAAATATGTCAACTAACTGATTTTGTTTTTTGTCAATATAATAATGCCTTTTTTTTGTTTGTTTTATCGTGATTAGATTATCTTAAAAACAAAACAAAAAAGCTCGTCCTATTTTCTACTTTTCCTGAACTTGTTTTGGTAGTTGCTTTCAGACCAGGTCAGCTCATCTTGCTTCTGGGGTGGATTTTAGTCAAGAAACATTTTCAGTCACTTCCTTGGTTAATTTAATTTCCTGGATTGGCATTTACTAGTATTTCTTTACAGTTTTTCTTTTGACTGGTAACCCTTTAAAACCAGAGCTTTTAATGGCTTGATCAAAAAAGATGGGTCATTTAGAGAGGTTAGGGCTCCTCTGCTTTGATTGGTATCTTATTAGTGGGCAGTAATGTTAATAACATTGATACATGTTTTCTGGATAGACTAGAGAGCAAAAGAAATGTGTATGTACCAGTGTGTTGGGAAAAATGGGTATATTACCCATTATTATTTTAATCAGTTATATACTTTACTTTTTTGTGAAGTGTTTGGATTCAAAAAGCATCAAAAGTATTTGAATGCAAGTACATTCTTTCCTGAAATAAATTTACAATATAGCAGTGGTGAGAGAGTGGGGGAAAGGCAGTGAGATGGAAGGAGAGGAGGGAGGGTTTGGGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATAACTAAAGAGATGACTGTAGACTGGGCATTAGAATGGATTACTAAAGGCAAGTTATGGGATTTAAAAAAATAAACTAGGCATCCACCTTTCCATGGTGAGATAGTAGGAATGATGCCCTTTAAAGATTCCAGCCTTATTATTGTATAAGAAATAAGACTTTTGATGGCACATGTAAAGCTGTAATTCCATCAGCTTATTCTGGTGACATTAAAAACCAAGAGTGAAGCTTGAATGGTTTATCAGTGTCACTGAAATCCAGAGATGAAATTACATCCTTATAAATATGCATGGCTGTTACAATGTATACTGACAGAAATCTGTAGGCAGTACTGAAATTCCTACTAAAAGCACAGTCACTTTTGAAGGATATGACTAAACTATAAATAAAATAATATTAAATGAGGTTGTATCAGTCTGATTTGTCATACCAATATCTGATTGAGTTTTTATGATGCTAAATTGTCTGTGTTGACATCTTATAGATAACTAAATTTAATCTTTTATTTATTATTGGTGTTAGTTTTCCTTAAACATATTTTGATAATGGTGTTACTAGATTAAATATTGCTCCTCAAATGCCTTAGTACCTGTTGAGCAAAGTAAAGTGTTCTTTGGAAATAAATCTTTGAGGAACTTGCTGTTGAAAATAATAATTTTCTTTGAACTTGTCTAAGTAATGGGCTCAGATTTAGAATATTAGAGGATTTTATGAACTAATATGGGATTTTATTTAATTTTTAATTGTTCATTAATACCTCTGTGAAGTATGTTACAGATGCAAACTCTGATATCTCCCCTGTGTTTAAGCTGTGTGTTAATTTATTCAATCTTTCGTGATGCCTTTGCAGGTTTTGAGAATGACCAATGTATTGTTACCCTAGCACCTAGTACATTCTGATTAAATGTGTATGTTTTACCCTGTTATGTTGGAATAATTCGGGAACAAAGTTAATTTTTCAAGAAAGCCAGTCCGTGAATTATGTAAATCTGATTCATTTTCATTTAGTATTATAATATTATAGCTTATGATTAATTTATAATTATTAAAGCTTTTTTATTTTTAGTTGTGTAAAATGTGTGGATATTGTTTATAATATTAATGTTATTTTCCCTCTCAACTTAATTTGAATGTTCTCACTTAAAGTTGAAATATTACAAGCCTGTGAACCCCAGTTTCAAAATGCAAAACACTCTAAAACCCTGGAGTTTTTTCATAAATTTCACACAAATTCCTTTGGAGGCAAAACTTAATTTGAATTGATATATGGCCATTTATAATTGTTATTTATTCCACTTGATGTGAACATTTATATCTCACTGCTTCGTTGTATGTATTGAGCATATTGTTTCATTATGGATGCTGCCTTAGACCCTGCTAGATAATACTTAACGTATGGTTTATGCAACCTATTACTTTTCTAAAATCTGAATTCCAAACACACCTGGTTTATTTTGTTTCGGTTTGGTTTACCACACTAG
Seq C2 exon
AATAAGGAAGAAGTGATGGCTGTGAGGCTTCGGGAAGCAGATAGCATAGCTGCTGTGGCTGAACTACGACAACACATTGCTGAGCTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208:ENST00000370331:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development