RnoINT0056971 @ rn6
Intron Retention
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2988677-2991160:+
Coord C1 exon
chr14:2988677-2988823
Coord A exon
chr14:2988824-2991064
Coord C2 exon
chr14:2991065-2991160
Length
2241 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTCTTATTTGCTGCTGTAGAAT
3' ss Score
7.9
Exon sequences
Seq C1 exon
AACCAGATCAATAGTAACCAGCTTCGAAGAGCAGAGCAAGAGGTGACCAGTCTGCAGGAGAAGGTGTGCTCCCTGTCTCTGAAGAACAAGGGGTTGCTTGCCCAGTTGAGTGAGGCGAAGCGCAGGCAGGCAGAGATTGAATGCAAG
Seq A exon
GTGAGTGTCAGTGCGGTGGGGCTGTATACATTTATCAGGATCGGATTTGGCTTTGGTTCTTTTAGGCAGGCTTTCAATGTATAGCCTGGCTAGCCTTGATTTTACTTTATAGACCAAACTGGCTTCAAAATCTCATTGATTCTTTTGCCTCTGCCTTATTGCTTGGATCACAGGCATGCACCACACCCAGGTTACATTTTGCTTCTTTTTTCCTGATCTTGTTTCAGTGGTTGTTCTCAGACAGGTTAGCCCATTTTGTTCAGAGGGTGAGTTTCAGGGAAGAACCTCATTTCAGCCTTAGCCTTGGTTAAGTTTGTGTCTGCATTGGCAGTTACTAATGCTCCTTTGTGATGTGCCTTTTGACGAGCATCCCTTTAAAATCTAGCTTGTGATGACTCACCTGAAAATGCAGGTAAGTGCACAGGTTGAAACTCCTCCCTTGATTCATCATATTAGCAGGCAGTTACTGCTAATATCTTTGCGTAACAGAGAGCAAGAGAAGTGTGTGTGGCAGGTGGGTTAAGAAAAATTAGTACAATTTCTGTTAATCTTTTAAACTAAATTGCATTTAAAATAAATTCCTTTTTTATGAAAGGAATGTAAGTAGCTTTAGGACAATTGGCTGGGGCCATCGGGTGAAGAATAGAGCACAAGTGTGTGTGAGAAATCACTGAAAAGTGCAGACTCCTGAAGGGAAGTCATGATACTTTAACAGGAAGTACTAAACTCTTTAGCAGACAGTAGGAACGATGCCCTTATGTACTCAAGCTGCCTTATTCTTTGAAAATTAAGACTTTTGGAGGTACATATAAAGCTGTAATTCCATCAACTGACTCTGGTGTCATTAAAAACCAAGAGTGAAGCTTGAGTGGTTTATCAGTGTCACTGAAATCCAGAGATGAAATTACATCCTAGTAAATATTCATGCCCTTTAGAATTTAGACTGAAGAAATCTGTAGGCAGCAGTAGAATTGTACTATCTCAAGAATTGTCCTTTTTCAAAAATGGAGCTGGATTCATTTAGAAATAATGTAGTGCACACTGAGGTTACATCCCTGTGACTTGTGATAACTGGTAGACTATAATGCCACATTGCCCTTGCCGATTCATCGTCAATAGATTCTCTGTGTGGATGTCAGTTTTCTTTAAACATTTTGGTAACAGTGGTTCTGAATTTAATACTATATTTACCTGTTAGCAAACTAAAGTGTTCAATTAAGATATTTGTTTTGAGTTTTTCTAAGTAATGGATAAAGACTCAGAATGGTAGACTCAGCATATGGATACAGGATTTTTCTCTAAGTTTTTATTTATCATTCATGTAAAGTATACCAAGGACACTAGCTCTGAAATGCCCCGTATGTGAGCTCTGCTTGATTCAGTCTTCTCTACTGCCTTTGCAGATCCTGATAATACATGTTAGTGTATAAATTGTCATTTTAGCACCTAGTACTTCCTGTTCCCTTTGTTAGAGTGTAACAATTCCATAACAACTGTAACTTTTCAAGGAAGGCAGTCCCTTTGCTATATAAGTAGATTCATTTTCATTAAGTTTTTTATGATTAAAGCTTATGATTTGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCACCCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTGTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATACATAAGATGAATGAATCTTTTTAAAAAGCTTATGATTTGTTTGTGAATGATCTTTAAGCTCATTTTATTTTCATTTATATAAAGTATCTGGATAGTGTTTGTGTTCACATTATTTTTACTCTACAAATGAATTTGAATATTCTCACTTTAAATAGTAAAAGCCTATAATCCCCTTTCACAACCCAGAACACCTAAATCCCAAAAGTTTTCTCATAAATTTTACCAGGTTCATCTGGAGGCCGAACCTGCTTTGAATTGATAAATGGCCATTTATAAGTTGGCTTTGAGTTGATAAGTGGGCATTTATAAGTTGGCTTTGAGTTGATAAGTGGGCATTTATAAGTTGGTTCATCCTGTTGGTCGTGGTTGTTTATACCTGGCTGCCTCAGACACTGCAAGGTAATACTGATGTTGCAGTTTATATATCTTAATATTTTGTAAAGTCCGAAAATGCTCAGCTTCGAACTGAACTGTTTTGTTGCTATGTCTTATTTGCTGCTGTAG
Seq C2 exon
AATAAGGAAGAAGTCATGGCTGTGAGGCTCCGGGAAGCTGATAGCATAGCTGCCGTCGCCGAATTACAGCAGCACATTGCTGAGCTTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039:ENSRNOT00000061630:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]