MmuINT1009808 @ mm10
Intron Retention
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107788199-107790508:-
Coord C1 exon
chr5:107790362-107790508
Coord A exon
chr5:107788295-107790361
Coord C2 exon
chr5:107788199-107788294
Length
2067 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTCTTGTTTGCTGCTGTAGAAC
3' ss Score
7.86
Exon sequences
Seq C1 exon
AACCAGATCAATAGTAACCAACTTCGAAGAGCGGAGCAAGAGGTGAACAGTCTGCAGGAGAAGGTGTGCTCGCTGTCTGTGAAGAACAAGGGCTTGCTTGCCCAGTTAAGTGAGGCAAAGCGCAGACAGGCAGAGATTGAATGCAAG
Seq A exon
GTGAGTGTCAGTGCAGTAGGGCTTTATACATTTATCAGGATTGGGTTTTGTGGTTTTGTTTTGTTTGTTTTTGAAAACAGACTTTGAATATATAGCCCTGGCTAGCCTGGATTTTGCTTTATAGACCAAACTGGCTTCAAAATCCCATTGATTCTTTTACCTCTGTCTCTTATTGCTGGGATCACAGGCATGTGCCACACCCAGAGTAAATTTTCCTTCTTTTTTCCTGGTCTTGTTTTAGTGGTTGTTCTCAGACAAGGTTAGCTCATTTTGTTCAGAGGGTAAGTTTCAGGGAGGAAACCTCAGTTTTAACCTTAACCTTGATTAAGTTAATGTCTTAACTAATGCTCCTTTGTGATGTGCCTTTTGAGGGTTAGCCCTTTAAAATGCAGCTTGTAATGGCTCACCTGAAAATGCAGGTAATTGCAGAGGTTGAAGTTCCTCCCTTGACTCATCATATTAGCAGGCAGGCAGTCACAACTAATGTTTTTGTGTAACAGAGAGAGCAGGAGAAATGTATGTGCGCAAGTGGGTTAAGAAAAATGAGCACAATTTCTGTTAAGCTTTCAAAATAAATTGCATTAAAATAAATTCCTTTTTTATGAAAGGAACTTAAGTAGCTTTAGGTAATGAGGACAGTTGGCTGGCGCCATCAAGTGGAGAACAGCACGGACACACACGCACAAGTGTGTGTGAAAATCACTAAAGAGATGCATGCCATCTGAGGCCTAGTGCGGATTCCTGAAGGGAAGTTGTGAAACTTTTAACAGAAAGTACTAATCTCCTTAGCAGATGGTAGGTCTCATATATGCAAGCTTTATTATTCTATGAAAAATAAGACTTTCAGTGGCACATATAAAGCTGTAATTCCATCAACTCGTCCTGGTGTCATTAAAACCAAGAGTGAAGCTTGAGTGGTTTATCAGTGTCATTGAAATCCAGAGATGAAATTACATCCTAATCAATATTCATGGCCGTTAGAATTTAGACTGAAGAAATCTGTAGGCAGCAGTAGAATTGTACTAACTTGAAGAATTGACCCTTTCTAAATTGCAACTGGATTCATTTAGAAATAAGGTAGTGCACAGTGAGGTTACGTCCCTGTGACTTGTCACAGTGGTAGCTGGCAGACCGTAATGCCACATTGCCCTTGCCGATTCATCATTAACAGAGTATTAAATTTAATTTTCTCTATATGGATGTCAGTTTTCTTTAAACATTTTGGTAACAGTGTTTCTGAATTTAATATTGTTTTAGCACCTGTTAGCAAAATAAAAAAAAATGTTCAGTTATGAAGATACTTGTTTTGAATTTTTCTAAGTAATGAATAAAGACTCAGAAAAGGAGACTCGGCAGATGGATACAGGATTTTTTTCTTAGTTTTTATTTGTTCATCTTTGCCTTGTGAAGTACACTGAGGACACTAGCTCTGATATACCCTTGTGTGCGAGCTCTAAGTTGATTCAGCCTTCTCTATTGCCTTTTGCAGATCTTGGAATTAATGTTAGTGTATTAATTGTCATTCTGACACCCAGTAACCTGTTTATTTCCCTTGTTAAAGTGTAACAATTCCATAAGAACTGTAACTTTTCAAGGAAGCCAGTCCCTTAGTTATATAGGTAGATTCATTTTCATTAAGGTTTTTTGTGATTAAGGCTTATGATTTGTCTTTGAGTAATCTTTAAAGCTCATTTTTCACTTATATAAAGTATCTGGATAGTATTTGTATTAACATTATTTTCACTCTACTCGAATATCAAAATTAATTTGAATATTCTCACTTTAAATAGTAAAAGCCTATAATTCCCAGTTTTACAATCCCGAACACCTGAATCACAAAAGTTTTTTCTTAAATTTTACACAGGTTCATTTGGAGGCAGAACCTGATCTGAATTGATAAATGGCCACTTCTAAGTTGTTTTTGTCCTGTTTGTTGTGGTTGTTTATACCAGGCTGCTCAGACACTGCTGGGTAATGCTAATGTGCAGTTTATACACCTTAATATTTTGAAAATGCTTGCTTTTTGAACTCACCTGTTTTGTTGCTGTGTCTTGTTTGCTGCTGTAG
Seq C2 exon
AACAAGGAGGAAGTCATGGCTGTGCGGCTCCGGGAAGCTGATAGCATCGCGGCCGTGGCTGAGCTGCAGCAGCACATTGCTGAGCTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831:ENSMUST00000112642:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types