MmuINT0065103 @ mm9
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103059449-103060214:+
Coord C1 exon
chr11:103059449-103059547
Coord A exon
chr11:103059548-103059796
Coord C2 exon
chr11:103059797-103060214
Length
249 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GTGCTTCCTTTGCCCGCCAGATC
3' ss Score
9.78
Exon sequences
Seq C1 exon
TGCTGAAGACAGTGCCCTTCACTGCCCGCACCGGCAAGCGGACATCCCGGCTCCTCTGTGAGGCCAGCCTGGGAGAGGAGATGACCCTTTAGCTCCCAG
Seq A exon
GTACCTAGATAACCTGGTCTGTGACTCCAGTGCTGGTGGAAGCCTGGGAATTTGGGGCGCGCGCGCACGGGGGGGGGAGGGGCAGACATGCTTCCCCATCCTGGGCCACTACATGGCTGGGATGTTTTAGAGGGTGGTGTTTCTGGCTGTGGTAAATGAGTGTCCCCTTCCACGTGTACAAAATCAAGTCCTTAGAAAGATGAGCCTGTGCCCTGAAGCCTGGGCCAATGTGCTTCCTTTGCCCGCCAG
Seq C2 exon
ATCTTCGGAACCAGCCCTACATCCGTGCAGACACAGGACGTCGAAGTGCTCGCCGGCGCCCCCCTGGACCCCCACTGCCGGTCACTACTGACCTCGCGCTGTAGTCACTGTTTCTGCTGGTGGATTCTAAAAGGCTGTAGGCAGGCTGGAGCTCAAAGAAGGTGGTCCTTAGCTCGGCTGGGTCGGGCGTCCTCTCCTCCTGCCGACTACTAGCCTTGAAGACTCCTCCACTCCACTCCACCCCCACCCCCCACCCCCCCAAAAACTGGTCGTAGCACCCTCTCCCTCCAATAGCCATACTCAGCCTGAGCGGGAGCCTGGCCTGTAACTTATAAAGTGCACCTCGCCGCCGCCCTAGCTCGGAAGACCCTCTATGGACCTTATTTTTATACAAGATTAATAAAGATGTTTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-Fmnl1:NM_019679:26
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATGACCCTTTAGCTCCC
R:
AGAGGGTGCTACGACCAGTTT
Band lengths:
307-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: