MmuINT0065297 @ mm9
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:30881726-30888708:-
Coord C1 exon
chr2:30888550-30888708
Coord A exon
chr2:30884404-30888549
Coord C2 exon
chr2:30881726-30884403
Length
4146 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
TCTTTCTTTTTGTGCCGCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTCAGAACGAAGGCACCATTTCCGTAGTTGAAGGAGAGACGCTGAGCGTGATTGAAGAGGACAAAGGCGATGGGTGGACTCGCATCCGCAGAAATGAAGACGAGGAGGGTTACGTCCCCACTTCCTACGTCGAAGTCTATTTAGACAAAAACGCCAAAG
Seq A exon
GTGCTAAGACTTATATTTAATCCACTTAAAACAAAACAAAAAGCATTGGAGTTGTCTCTCCCCACCACTGTGGCTGTTACAGGCCTTCAAGAGGTCAGCAGAGAGCAAGCGACTCAGACACTCGGGGAACTGGGGGCATCTTGTGCCTGGGTTCGCTTGTCCAACTTGGCTGTGTACAGAACTGCCACCGGCTAGCTTACATCTGTGTCGTTTGAAATCTGATCGGCGTTTCCATTCCATTCAACAAAATGTGTAAATTTAAAATATGATGTATGGTGGTGGCTCGTGCCTATAATCCCAGCTCTCAGGAGGCGGAGCCAGGAGTAGCCAAGTGAGTTTCAGGCTAGCCTGGGCTTCAGAGCATCCAAGTGAGTTTCAGGCTAGCCTGGGCTTCAGAGTAAGACCCAGTAAAAATAAGTCATAAATAAAAGTTCCTTCATCGATGGAAGTAGCCTGGAACGTTCTCCTGGTGCCCACACTGAGTAACCTGACGTTGCAGCTCGGGTTTCCTGTGTTACCCATTTCTTGTCTGAGTGTCCCAAACAACCAAAAGAGGCCCAGGATGGTGCACTCCTTGAGCGATTCATTTTGACTTGACATTCATCTCCTGGCTCCATCGGTGGTAGAGTATCTTCAAGCTGTTGAGGCAAGCTTGCTTAGCAGCCCGGCGCCCCAGCGCCCCTGTGGGCCTAATTTTGCTCAGACTTGGTTCAACTGTTTGTGGCCAGAGGAGCAGCTTTGCTGCGAACAGAGCCTGGTGTGTCAGCCGTTGCAAGCAATGGACTCAACATGTTCCCTTTTAAGTGGAAGGCTGTTTAATCGTTGACATCTATAAGACTCCAAGTTAGAATTTACCAGAGGCTTTGAGATTGCTGGCACAGTTGACCTGCCTAATTACAGCCAGAGTAAAGTAAAAGGTCTTAGTGTTTTAAAGGAATCTGGGCCATGTGGGAATTTGCATTTTTAAGTCAGTACTGATGCTTGGGGGGGGGGGCGGAGAATAACACTGGGCATGTGCAGAGGCAGCTGCCAAGCCCAGGACTGAATGGTGCCCATCATGACAGCCCACCTCAAGGCCATCAAGAGCCAGTTGTAAATAAATGGATGGAAATGAGAAAACATCCAGCCATATCCAGCCTTTCCTTTCCTTTCCTTTTTTTTTTTTTTTTGCTTTGTTTTGTTTTCTTGTTTTGTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTATCCTGGAATTCCCCCTGTAGACCAGGCTGGCCTTGAACTCAGAGATTCACCTGCTTTTGCCTCCTCCGTGCTGGGATTAAAGGTGTGTGTCGCCACTGCCCAGCTTTTGTGTTTTTGCTTTTTTTTTTTTTTTTTTTCTTTTTTTAAATTTGAGGTGGTGTAACCCAAGATAGCCTTGAACTCACAATTCCTATTCCTCTGCCTCAGCCTCGTGATGGCCAAGATAAAGACAATATTTCATAGTAGTGACTGGCTGTTGGCAGTTACATAAGTGGCACAAAGAGGTCCCCATGGCCTTCCTGAAGCCCCAGCAGCCACACCTCAGACTAGTGCAGTCTCGAGCTGACCCAGCCCACCAGACCTGTTTAATACACATCAGCTTTGTAGCTCACATTTTCTCCGAGTGAGTCTTGCTGTCACAGTACTTTTAAGGTCAGCCATTGTGGGGCTCAATCCCCCTGCAGGTACCCTGAACCCCTGAAGAGCCTTCTGATTGGATAGGAGGAAGGGCAAATTGGGCATGTGACCAGGTGGCTAGAAAGACTGGAGAAGCCCTCTTTATCCAGAACTCACTTCTTGGCTGTGATCTCCCCCTCCTTTTCCTGTTCTTCCTCCTTCTCTTTTCTCCTCCACTTCTACTTCTTCTCCTCTTCTTCCTCCTCCTTCTTCTTTTTGGCTTTTCTAGAAAGAGTCTCACTATGTAGCCCTGGCTATCCTGGACAGCCTGAACTCACTCTGTAGACCAGGCCGGACTCAGACTCACAGAGATCCACCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGAAGTGCATCACTCCCACTCCGTTGATAGGCAGAAGCCAGCAGAGTTCTGTGTGTTTAAGATCGGTCTAGTCTACACAGTGAGTTCCTGAACAACTAGAACTACATAAGATAGACCCTGTCTTAAAAACAAAGCCCAAAACATCTCAAAGAGAGAGGTCCAGCAGTGAGCTGGTGAACGGCCTGCTAGGTGAACCGGAGGGGTTTCCCTCTGGTTTGTGCAGGTCCTGGCTTAAGTGTGTGCTATTAAGTTGACTACCTTAGGATCCGAACAGATGAATGAGTTCAGCATTGACTAACTGAGTGATGCTCTGTAGTTTCTATCTCCTCAGTGGCGAACACAGACATTTCTTCCAATAGTTTGCTGTTTAAAAAGGGAGACTGGAGATGTGTGTCAGGGGAAGGTGGCTCGGTATGTGAAGACATTTGTCCCCAAGCCTGACGAATTCTAGTGCTGTCCCCGGGACTCACATGGTTGAAGGAAAAGACCAACTCCCCTAAGTTGACCTGTGTCCCAGAAGTTGACCTCTGACCTTCGTGCACCATGGCACATGTGCACACTTACACAAAACACATACAAATCAATGTAATCCCAGCACTTGGGACCCAGATGAAGGTAGATCTGTCAGTTCAAGGCCAGCCTGGTCTACATAGTGAATTCTATGCCAGCCAGGGCTACAGAGTAAGATCTTGACTCAAAACAACAGAAAATAAGTAAATAAGGAGAGAGCTGAGCTGCCTGCAGCCTTCTTTTAGCTGAGGACCATATCTGAGGTTAGCAGCCATGCAGGAGCCGCCCCCACTTAGCCTCTTCCACACCCTGCCCTCCTGCCTCCAACACCAGTGGGCCCAGCTGCTCTTCCCCAACTCCCAGAAACTCAAAGCACTTCTCAGATTTTTAAAAAATAACGCAAAGGCACTTTCTCTCTCTCTCTCTCTCTCTCTCTGGTATCAATGATGTGCCTAACCATTGCCAAACTCCTTAGACTCCTCCAACCCTTTGCCTTACGGTGGCTTTTGACATCACTTCCTGTTTGACCATGTCTGTGATCCTGCACAGCAGGATATATTTGTATATATTGCACTTTGGAACCTAGAAGGATGCCTTACGTAGTATTGTTTTATTTGTTATTCTTCTGCCTAACCACCTTTTTGTTTTTATAACTGCTGGGGAGGCCCCTGGACTCTTGCACTGTAGCTAGGTCCCCGGCTGGCTGCTGCGCACTTGACTTTATTGTAAACCCCTGGGCTCTGAGTAAGTCGTTTGAATATAGCCATCATGATTGCATCTTTCTATTCTTATCCTAAGAGAAAAGAATATTCTTATCTGTCGCCTTCCAGTTGTGCCCTCGTATCTGCCTCTCTAATAAATATTATTATTTTTCTCAGTGCTGTGTATTTTAAGTGATTTTTCTCTTTTTTGAGAACATTATTCTCTGTAATAACACTTTCATCTCTAGTACTGAGGACTTTTCAAGCCAAATACTTTTCCCCCTTGCAAATAATTGTGCCTCTCTTTCTTACCCCTCCTGTCCTGAGGGCTTGGAGCATCTGCTTTTCTTGCATCTTGTCTCCCTCTGGCGATGGAGAGCTTTCGCATTTAGTGAGGCCCTGGGCAGCCTTAGATTCCCCTCTCATCAAAGGTTCACCTTACTACAGAGACCTGTGGTCACAACGGGAGAGAGAATTTGCCCTTTAACTTCCTCACACCATCCTGAACCAAAAAAAAAAAAAAAGATTCAGTTTGTGAAGAAGATGAGCAAGTGGGAAACCTTATTAATCTTTTTTGGTCCAGAAATGGGGCCAGCTAAACATGGGAACTAAAAGGCCAGGGCTGTTGTGCCAGAGGATGGGAGGCAGAGACATGCGGATCCTGGGTTAAGTTCATCTTCAGCCATATAGAGAATTTGAGGTCACCCTAGACTACCTGAGAGCCTGTCTCCAAACAGAAGACGTAGCCTCGAAAGCTCCCCATGGCAGAGCCACTGTGGTAACCAATTACTTAAGCCCCTCCCTTCTCCACAAGGCAAGCAGTTTGCCAGCGGCAAACCGCCTGCCTCTCTCTCACCTGCTGCTTTTCCTAACTCAGGGTTTTCTCTTCTTTCTTTTTGTGCCGCAG
Seq C2 exon
GTTCCTAAAGGCGTGGTGCACATGGCCAGAGTCCCCCGAGAGCCTCCCGGGAGGGAGCCATCATCGTCCAGCCCGCTTGTCCCCACAGGCCTCCAGCACCACTCAGGCTGGCTGGGCAGCCTCCAGCCCACCTGCAGGCTGGGTCCCCATATCCTGCCTCCCCTTCTCCTTCACAGCATGTTCCTGTGGCTCCGCCAGTCCCTCTGCCTGTGTACGGCACGGGTGTTTCTCTCCTGCAGCCCCCCACGGGGGCTGTCCACTTTACTCTGCTCCCTTCCCACCCAGGCCACCAAGACAGCTGGGCATGTGCCCTGTGTCCCTGCTCCTTCCGGGCTCCCAGTCCACCTGCTCATCGCCTGGCCACTCCTTGCACATCTCACACTGTGCCTTTGTCAACTGTCACCCCTGGTTTCCTGGTGACTAACAAAATTCTGACAAGGAGGGCCAGTTGTGCATCAGGTGGACTGAGCACCCAGCTGTCATCCATGCGTCTCTTGGGACTCATCGTCAGATGTGTCCTTCATGTCCAGAGGCTGCTGCCTCAGGCCTTCCCTGTCATCCAGCACTGTTACCTTCCACACTCCATTCCAGGGGATCTAGAGTAGGACTGGGGCACCCAGCCCCCATTCACCCCCACTCTTGTTATAAACCATCTACATGGCCCTAATTCATATTGGAGTCCCAAATCCAGCTTGTGGGCCAGCCCCGCTGTCTTGTCTGTGTCTACCTTCTATGAGCGCTGCCTACCTGTTTGTGGTACCCTGTGATGGAGGGCCTCACAGCCACACTAGTTACTGTAAGGCGGGCCTGCGGAGTCCCATAAGTAGCATTTGAGGACTCTCCTCTGTTCCCACCAAAGACCTTGTGCCTCTTGTAGTCCCTCCAATGGCTCTGGCCACTGCTTCTTCATCGGATCCTGTTCTCCAGAAGCCCCAGAGAATGGATGGAGCTCGCTTTTGAAGCTGTTGCCCTCCTAGAGTGGTGGAGCTTGGGGGAGTACCGAGGTGGTCCTTCGCACCTTTGAGCCACTCTCTCCTTTCCTGGTACAGAAGTACTCAAGGCTTTGGCCACAAGCCCCTGTGAAGGGTGCCCCACAAGTATGAGCTTGAGGAGGTTGGCGTCTCCCTCTGGGCAGTTGGTAGCTTAGCATCAAGTCAGAGGATGAAAGACAGGGAAGTCTTACAAAACCAGAGACAGGGACAGAGAGGGCAGGTCCTCAGGGTTGGGCCTGTGCTTTGTCCACGGTTTGTGGAAGTGCTGACATCCATGCATTGGGGCCAGTATTACAGACATTTTGTGAGGTACCACCTCAGAGCAGAGGGGAGGGTACCAAGGTGGGGGAGCAGCTGACAAGGTGGGCCTGGCTTTGGGTTTCAAGAGCAAGCAAGGATTAGCTTCAGGCTTTCTTGGCCCCGCCTCCTCCCCGTAAGGCCAAGCCCGGCACACTGCCCTCTGCCCTCTGGGACCCCTGTGAGGCTGTTCAGGACTCACATGAGGAAGACCTAGGGGACAGTATGGAAGTCTGGTACCTAAGAGTCAGGGTCTCAGCGCTGACACAGTTAGTCTGACCTGTGGCCCAGGCAGTTTCGCTCCAGCAGGTTACCAGGCATCTAACTCCAGAACCTCTGACTTTCAGCAAGTTGGGCTGACCACAGCCCCCTCCAGAGTGTTTTTTATGGGTCTGTTCACAGATCTCATTAATGCATGAAGGACAAGGAAAGACTTGCCACAAAGGTAAAATGGAGAGGCTGCCAGTCTTCTTCAGATGACCTTTAAAGCCTGCGCCTGTCCCTGTGTCCCCTCACTTCTTTTTTAATTTCCTGTACTACCTTACATCCAGAAAGGATGGTGGATGAGCGTCTTCAGGCCGTTCTCTGAGAAAGTCGGTCTGCCGTGGACATCCTGTGGAACTGTACTGGCTCTGGGGGGAAGGGAATGCAGGATTTCCCCAGAAGCTCTACACTCCCTGTCCCCAGGACCCACTGCCTGTCACCCCTAGCTGCTAGTGTGCTGAGACAAGAATGACTCACTGTAAAAGAACCTGCCCTGCAGATGACTTAGAGATGGAAATAAAAGGAACGTGACATTTACCGCTTTTTTTTTTTCTATGCAGGACGTGAAGCTGCAATGGCCCCTCCCTCTAGGCTGAGCATGCTTATCCAGGGCCCCAGCCCAAACAACACACAGGGAGGCCATTAATGCCTTCTGGTGGCATCTGTAGTGAACGTAGAATGTCCACATGAAGTTAAAAAAAAAAAGTTCCGTTCCTGCCAGTATTTTTCCCAGAAATTGCCGTTTTGTGATTCCTTTTGATTTTGTGTCTGTATAACATCCAAAATGTCTCTAATACTGGCCCCAACTTCTCTTTTAACCTGACATCAAGCACCTTTTAAATCATGCGTGTGCAAGTTCGTGTATGTGTGTGTGTGCCTCTGTATGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCTAATTCTAAGCCTTGAGGGCAGGGCACTGTTGGGAAGGCCCTCAGAGCTGTCAGGTCTTGGTCTTGCCTGTGACTCTGGAGGTGGAATTAAAACCAAACAAAGTGCTTTCAGTAGAGAGCACTCTTACCCATGTAATTAAATGTTAGTCCTTTCAATGTTAAATAAAGTATAACTTCTAGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-Fnbp1:NM_001177648:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=NA C2=0.418
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=74.1)
A:
NA
C2:
PF0001823=SH3_1=PD(83.3=66.7)
Other Inclusion Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: