BtaINT0063344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100289059-100293311:-
Coord C1 exon
chr11:100293153-100293311
Coord A exon
chr11:100289342-100293152
Coord C2 exon
chr11:100289059-100289341
Length
3811 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
CTCTGTCTTTTGTGTTGTAGATT
3' ss Score
11.08
Exon sequences
Seq C1 exon
GTCAGAATGAGGGAACCATTTCAGTAGTTGAAGGAGAGACGCTGTACGTAATAGAGGAAGACAAGGGCGACGGGTGGACCCGAATTCGGAGAAATGAAGATGAAGAGGGTTATGTTCCCACTTCCTACGTCGAAGTCTATTTGGACAAAAATGCCAAAG
Seq A exon
GTGCTAAGACTTATATTTAATACAACTTTAAAAAAACCCACAAAACTTTAAAATTGGAGTTGTTTCTCCCCGCAATCATGCCTGTTACAGGCAGTTCTTCAAAAGACTGGATGGGGAGCATCATGGTGTGTGTTTCTTTTAGGCACAAGCTGAATTTCCTGGGCTGGTTTTGATGATAATTCAGTGTCACTTGCTCATGACATTTTCCCTGGAAAGCTGCCAACTGCCAATTTACAATGGTGTCCTTTGAAATCTGATAAACATTTCTCCTTGGGGCAGCGACTGTAGATAACCAAAAAGTTGCCTTTTAGCTTCTGATTCATATTTCTGAATCTGAAAGTCCATGCATGTCCTAGGGGTGCAGAAGACTTCAGCTCTCACTAATAACTAGTGTCTGCCAGAAAGTGAACCACCTTAAGATGTTACATTTGGTAACTTCATAAACTGAACTGCGTTAAGTTTTACAGTCATTCATTTTGGAGGAAGTCATCAATAAAGAATAGCGTAAGTAAAGAATGGCGTTGGTACCAAAAGTGTGTCTATTTCCTTAAACATGTTTAAGATCATTGTTAGAGCACCATGCTACCCGGTTATGTCGATACGATCCTAGACAACCCATTGAATTATGGAAAACTTGGTCTTTCAACCAGTTGGTTTTCACATATGACTACTCATCTTTCTTTTGCCAGTTGACAGAGTTGATCAGACGTGCTAGAGCTGTTGAGATAAATTATGTAAAAACAACTGTCTTCATTCTGTTCTGTGGGAGGTTTTTTGTGCCCAGGTGGTGTTGTGAATAGACCCTTGTAAGCAACACACAGACCCCAGCACATCACTTTTTAAGGTTCTTTTGGTTTGTTTTAATCGTTGGCATTGTTAAGACCCAAAGTGTATATTTTACTGAAAATCATTTTAGAACTTCTAGATCCTTTTATATAATAACCATAAAGTGGTTAATTATATAATAAAATGTTTCACCATCTTAAAAGAATCTGGGTCACATGGGGATTTGCATTTTTAAATTGGCAGGCTAGGTAGTGAAACTGGGGACATGCCCAATGGTTGTGCTTATGTCTAGAATCTTCCCTGAGATCACAGAGAACCAGCTAAAAATGAGTCAGAGTAAAGGTATAGGATTGAGATTCTCTTTTTTTTTGGCTTTGAAAATTATTTATTCATGTCCTTCCTACTTTTAAACAGGAAATCAGCTCCTTGCTTCTACACTATGGACTCCTTTTAGAAGATCGGGTCAATTTAAAACTGATTTTAAAACTGACAGCAATGCATTATGGGGTCCAGGACCTGGCAGGAGTTATGGGTGCCTGTGGCAGATTCTAGCAGAAAGTTCTTCTGCATTTCCCAAGGGCCTCTCCATTATTCTTGCCTGGAGAGGAACTCGGTGACTATGGTCCATGGGGTCACAGAGTTGGACAAGACTGGGCAGCTAACATTTTAAGGGCCACCAAAATGGAATGTAGTAACCTTTACTTAATGACTGCCTGATTTTTAAAACACTTTTAATTTTTAAATAATCACAGATTGTCAGGGAGTTGCAAAGATAGTAGAGAGATCCCCTTTATCCAGCTTCCCCAAGTGGTTACATCTGACAAAATCGTGATCCAGTATCAAAAACAGGAAACCGACACTGGCCAGCCCGATTTTATTTTTTTAGTATAATTGTCATTTAAATTTCTTTTGCATTATTATACCTTTGCTGCTGTAGTATCAATAAAACCACCCATCCTGACCCCAGATCTCTCAGGAGAATCATTTCAGCACTTCCTTTTAACTACCACAGCAAGGAAAATCTGGTGGCCCTTAACCCATGGGGAGTTCATGAACAGTAGGTGGTCACAGCCTTGGGCATGTAAACCAAGTGAATACGTAAGACATTAAAACCCAGGATGAACTCATTTCCAGACTGTGAAGTATTGGAGAAAATAAACTAGACACTGAAAAAAAAAGTCTTAAAATGAGGCAAGTCAACATTAGGCTTTTTAAAACTTGATTTGAAAAGTATGGCATGCCATGAAGTCGGTTGAGTTTTGATTTATTTGTTTGTTCATTTTGCTTTTATTCCCCTCCTCTTTAGAGCTGTGCAAATCTAATTCAGGAAATAGCTCAACTGTCTTTTGGAAATGGGTGGGGCGATTTGGGCACATAAATTAGATCATTATTTTAGCTTGTATGCCTCAGTACCTTCAACCAGATGAATCTGTGTCCTAGTGACTCAACAGCAGAAGATATTTTTTAGTTTCAGGTCCATCTAAGTCAGTGTGCAAAGGATTAGCAGAAGTCTTGAAACAATTCCCAAAGAGTTCGGGAACTTCCATTTCCACCCCCAAGGCACACTTTGTGTTCTTGTAACAGTGAATCTGTCAAAAGTAGCGAAGTCTCAGCTTGTGTATAAAGTTTTCTCCTTTTATGCAGAGATACACTTAGAAGCTAAGAATGGATGTAGACTCTTTCCTTTCCCTACCTTGTTCATAAGTCTGTTCAGCCTGCCCCACAAACGCTGCCCTCCCTTTAAGCCCAGCGCAGCCGGGTGGGGCTGCTGCTTTCCGATGCCTGCGACTCAAGAGCAGTGGTCTTATCGTCAGTGATGCCCATGCACTTTCGTGTATGTGTGTGGTGTCTGCCAAGTGACTATTTAATAACCGCCAAAATAGTTAGACTAGAGGAAGTTCCACTGGCCAACTGAATTGTGACTGTCCTCTTTTATGGTTTAGTTTTGTTTTTTTTAATTGCTCTCTGTGAAATATGTCCATAACTGCCCCTTCCCCAATCTATTTGTATATACTGCAATAGGAAAACTAAAAGGATGACTTGAATTCGTTGTTTTAACGTTTTACTCTTTTATTTGTTTGTTTTATTGGTGATTCTGCTGCCTAATGACCTTTTTGTTTTTGTAACCGCTGGGGGAGCCGGAAGGACGGTTTCACTGGTAGCTAGGTCCCCTGCCGGCTGATCCACACTTGAGTTTATTGTAGACACTTGGGTTCTGAGTAAGTTTTGTTTAAATACGGCCAACATGACTGTTTCCTCTCTCTTCCTTATCCTCCGAGAAAAGAATCTGTGTGGCATCTTGTAGCTGTACCCTCGTATCTGCCTCTCTAATAAACGTTATATTTTTCTCAGTGTTGTGTATTTTAAATGATTTTTCACCTCTCCAAGAAATTCTGTGTAATCCAAGCATTTAACCCTCTCATCTTCAATAATGGGGAGTTTTCTAGCCAAATGCTTTTTTTAAAAAAAAGAAAAATTCTGCCCTTTCCCCCTTGTTAAATGATGGCACCTTCTCTGTTGCTCACCCTGTGTGCGCCTGTGGGCTTCGGGAGTCTGTCTCTCATTTCTCTTCTGTCCCCCAGATGAAGAACTTTCACTGTTTATTACTGAGCAATAGGTTTTCCTTTTCATCAAAGATGCTGCCTTTTACTGCCAAGGAACCAAGAGTGTCGGTCACAGAGAGAACCGGGTCCTTGGGCTCCTGACATCTTTCTGGGAAGCTGGTTTCTTTCTTTGTCTCAGAGCTCAATTGATGAGAAAGATGAGTTGGGGGCGTGCGGGAGTGCACCGTCTCCTGGGTGCTTTCTCTTGCCCCGGAAGGAAAGACTAGCTGCTCTGACTGCAGATAAAACCGTGAAAGTTCCTTATCTCAGACTTGCCCTGTGGTAACCAAGTGCTCTAAAAATGCCCCCTCCCCCGCCCTGTCCAGGGCGGTGCAGTCTGCCTGAGAGGCGGAGTGCCCGCCCCTGACCTGCCCGCCCTCCACTCTAACTGCCTTTTTCTTTCTCTGTCTTTTGTGTTGTAG
Seq C2 exon
ATTGCTAAAGGTGGTTCCGGGAGCCAGAGCCTCGGGGAGCCTTCCCAGGAGAAACCCTTCGGTCTGCTTGTCTCCACAGGCCTGAGCGCCCGCGAACGCCCTGGGCCTGGGTTGCTGTGTGGCCCTGGGCCCCTCAGCCTGAAGTTGACATCCATCCCCACCTGCAGCTGCTCGCTTTCTTCTTTTCTTTCCTTTTTGCAGCATGTTCCTCAGAGCCCGGCTCCGCCCCTGGCCCAGTCTGGCCGCCTCTTGGCAGGGGGAGGGCGTCCCTGCCCCGCGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313:ENSBTAT00000027072:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(86.3=81.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development