MmuINT1010411 @ mm10
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31026207-31033188:-
Coord C1 exon
chr2:31033030-31033188
Coord A exon
chr2:31028884-31033029
Coord C2 exon
chr2:31026207-31028883
Length
4146 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
TCTTTCTTTTTGTGCCGCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTCAGAACGAAGGCACCATTTCCGTAGTTGAAGGAGAGACGCTGAGCGTGATTGAAGAGGACAAAGGCGATGGGTGGACTCGCATCCGCAGAAATGAAGACGAGGAGGGTTACGTCCCCACTTCCTACGTCGAAGTCTATTTAGACAAAAACGCCAAAG
Seq A exon
GTGCTAAGACTTATATTTAATCCACTTAAAACAAAACAAAAAGCATTGGAGTTGTCTCTCCCCACCACTGTGGCTGTTACAGGCCTTCAAGAGGTCAGCAGAGAGCAAGCGACTCAGACACTCGGGGAACTGGGGGCATCTTGTGCCTGGGTTCGCTTGTCCAACTTGGCTGTGTACAGAACTGCCACCGGCTAGCTTACATCTGTGTCGTTTGAAATCTGATCGGCGTTTCCATTCCATTCAACAAAATGTGTAAATTTAAAATATGATGTATGGTGGTGGCTCGTGCCTATAATCCCAGCTCTCAGGAGGCGGAGCCAGGAGTAGCCAAGTGAGTTTCAGGCTAGCCTGGGCTTCAGAGCATCCAAGTGAGTTTCAGGCTAGCCTGGGCTTCAGAGTAAGACCCAGTAAAAATAAGTCATAAATAAAAGTTCCTTCATCGATGGAAGTAGCCTGGAACGTTCTCCTGGTGCCCACACTGAGTAACCTGACGTTGCAGCTCGGGTTTCCTGTGTTACCCATTTCTTGTCTGAGTGTCCCAAACAACCAAAAGAGGCCCAGGATGGTGCACTCCTTGAGCGATTCATTTTGACTTGACATTCATCTCCTGGCTCCATCGGTGGTAGAGTATCTTCAAGCTGTTGAGGCAAGCTTGCTTAGCAGCCCGGCGCCCCAGCGCCCCTGTGGGCCTAATTTTGCTCAGACTTGGTTCAACTGTTTGTGGCCAGAGGAGCAGCTTTGCTGCGAACAGAGCCTGGTGTGTCAGCCGTTGCAAGCAATGGACTCAACATGTTCCCTTTTAAGTGGAAGGCTGTTTAATCGTTGACATCTATAAGACTCCAAGTTAGAATTTACCAGAGGCTTTGAGATTGCTGGCACAGTTGACCTGCCTAATTACAGCCAGAGTAAAGTAAAAGGTCTTAGTGTTTTAAAGGAATCTGGGCCATGTGGGAATTTGCATTTTTAAGTCAGTACTGATGCTTGGGGGGGGGGGCGGAGAATAACACTGGGCATGTGCAGAGGCAGCTGCCAAGCCCAGGACTGAATGGTGCCCATCATGACAGCCCACCTCAAGGCCATCAAGAGCCAGTTGTAAATAAATGGATGGAAATGAGAAAACATCCAGCCATATCCAGCCTTTCCTTTCCTTTCCTTTTTTTTTTTTTTTTGCTTTGTTTTGTTTTCTTGTTTTGTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTATCCTGGAATTCCCCCTGTAGACCAGGCTGGCCTTGAACTCAGAGATTCACCTGCTTTTGCCTCCTCCGTGCTGGGATTAAAGGTGTGTGTCGCCACTGCCCAGCTTTTGTGTTTTTGCTTTTTTTTTTTTTTTTTTTCTTTTTTTAAATTTGAGGTGGTGTAACCCAAGATAGCCTTGAACTCACAATTCCTATTCCTCTGCCTCAGCCTCGTGATGGCCAAGATAAAGACAATATTTCATAGTAGTGACTGGCTGTTGGCAGTTACATAAGTGGCACAAAGAGGTCCCCATGGCCTTCCTGAAGCCCCAGCAGCCACACCTCAGACTAGTGCAGTCTCGAGCTGACCCAGCCCACCAGACCTGTTTAATACACATCAGCTTTGTAGCTCACATTTTCTCCGAGTGAGTCTTGCTGTCACAGTACTTTTAAGGTCAGCCATTGTGGGGCTCAATCCCCCTGCAGGTACCCTGAACCCCTGAAGAGCCTTCTGATTGGATAGGAGGAAGGGCAAATTGGGCATGTGACCAGGTGGCTAGAAAGACTGGAGAAGCCCTCTTTATCCAGAACTCACTTCTTGGCTGTGATCTCCCCCTCCTTTTCCTGTTCTTCCTCCTTCTCTTTTCTCCTCCACTTCTACTTCTTCTCCTCTTCTTCCTCCTCCTTCTTCTTTTTGGCTTTTCTAGAAAGAGTCTCACTATGTAGCCCTGGCTATCCTGGACAGCCTGAACTCACTCTGTAGACCAGGCCGGACTCAGACTCACAGAGATCCACCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGAAGTGCATCACTCCCACTCCGTTGATAGGCAGAAGCCAGCAGAGTTCTGTGTGTTTAAGATCGGTCTAGTCTACACAGTGAGTTCCTGAACAACTAGAACTACATAAGATAGACCCTGTCTTAAAAACAAAGCCCAAAACATCTCAAAGAGAGAGGTCCAGCAGTGAGCTGGTGAACGGCCTGCTAGGTGAACCGGAGGGGTTTCCCTCTGGTTTGTGCAGGTCCTGGCTTAAGTGTGTGCTATTAAGTTGACTACCTTAGGATCCGAACAGATGAATGAGTTCAGCATTGACTAACTGAGTGATGCTCTGTAGTTTCTATCTCCTCAGTGGCGAACACAGACATTTCTTCCAATAGTTTGCTGTTTAAAAAGGGAGACTGGAGATGTGTGTCAGGGGAAGGTGGCTCGGTATGTGAAGACATTTGTCCCCAAGCCTGACGAATTCTAGTGCTGTCCCCGGGACTCACATGGTTGAAGGAAAAGACCAACTCCCCTAAGTTGACCTGTGTCCCAGAAGTTGACCTCTGACCTTCGTGCACCATGGCACATGTGCACACTTACACAAAACACATACAAATCAATGTAATCCCAGCACTTGGGACCCAGATGAAGGTAGATCTGTCAGTTCAAGGCCAGCCTGGTCTACATAGTGAATTCTATGCCAGCCAGGGCTACAGAGTAAGATCTTGACTCAAAACAACAGAAAATAAGTAAATAAGGAGAGAGCTGAGCTGCCTGCAGCCTTCTTTTAGCTGAGGACCATATCTGAGGTTAGCAGCCATGCAGGAGCCGCCCCCACTTAGCCTCTTCCACACCCTGCCCTCCTGCCTCCAACACCAGTGGGCCCAGCTGCTCTTCCCCAACTCCCAGAAACTCAAAGCACTTCTCAGATTTTTAAAAAATAACGCAAAGGCACTTTCTCTCTCTCTCTCTCTCTCTCTCTGGTATCAATGATGTGCCTAACCATTGCCAAACTCCTTAGACTCCTCCAACCCTTTGCCTTACGGTGGCTTTTGACATCACTTCCTGTTTGACCATGTCTGTGATCCTGCACAGCAGGATATATTTGTATATATTGCACTTTGGAACCTAGAAGGATGCCTTACGTAGTATTGTTTTATTTGTTATTCTTCTGCCTAACCACCTTTTTGTTTTTATAACTGCTGGGGAGGCCCCTGGACTCTTGCACTGTAGCTAGGTCCCCGGCTGGCTGCTGCGCACTTGACTTTATTGTAAACCCCTGGGCTCTGAGTAAGTCGTTTGAATATAGCCATCATGATTGCATCTTTCTATTCTTATCCTAAGAGAAAAGAATATTCTTATCTGTCGCCTTCCAGTTGTGCCCTCGTATCTGCCTCTCTAATAAATATTATTATTTTTCTCAGTGCTGTGTATTTTAAGTGATTTTTCTCTTTTTTGAGAACATTATTCTCTGTAATAACACTTTCATCTCTAGTACTGAGGACTTTTCAAGCCAAATACTTTTCCCCCTTGCAAATAATTGTGCCTCTCTTTCTTACCCCTCCTGTCCTGAGGGCTTGGAGCATCTGCTTTTCTTGCATCTTGTCTCCCTCTGGCGATGGAGAGCTTTCGCATTTAGTGAGGCCCTGGGCAGCCTTAGATTCCCCTCTCATCAAAGGTTCACCTTACTACAGAGACCTGTGGTCACAACGGGAGAGAGAATTTGCCCTTTAACTTCCTCACACCATCCTGAACCAAAAAAAAAAAAAAAGATTCAGTTTGTGAAGAAGATGAGCAAGTGGGAAACCTTATTAATCTTTTTTGGTCCAGAAATGGGGCCAGCTAAACATGGGAACTAAAAGGCCAGGGCTGTTGTGCCAGAGGATGGGAGGCAGAGACATGCGGATCCTGGGTTAAGTTCATCTTCAGCCATATAGAGAATTTGAGGTCACCCTAGACTACCTGAGAGCCTGTCTCCAAACAGAAGACGTAGCCTCGAAAGCTCCCCATGGCAGAGCCACTGTGGTAACCAATTACTTAAGCCCCTCCCTTCTCCACAAGGCAAGCAGTTTGCCAGCGGCAAACCGCCTGCCTCTCTCTCACCTGCTGCTTTTCCTAACTCAGGGTTTTCTCTTCTTTCTTTTTGTGCCGCAG
Seq C2 exon
GTTCCTAAAGGCGTGGTGCACATGGCCAGAGTCCCCCGAGAGCCTCCCGGGAGGGAGCCATCATCGTCCAGCCCGCTTGTCCCCACAGGCCTCCAGCACCACTCAGGCTGGCTGGGCAGCCTCCAGCCCACCTGCAGGCTGGGTCCCCATATCCTGCCTCCCCTTCTCCTTCACAGCATGTTCCTGTGGCTCCGCCAGTCCCTCTGCCTGTGTACGGCACGGGTGTTTCTCTCCTGCAGCCCCCCACGGGGGCTGTCCACTTTACTCTGCTCCCTTCCCACCCAGGCCACCAAGACAGCTGGGCATGTGCCCTGTGTCCCTGCTCCTTCCGGGCTCCCAGTCCACCTGCTCATCGCCTGGCCACTCCTTGCACATCTCACACTGTGCCTTTGTCAACTGTCACCCCTGGTTTCCTGGTGACTAACAAAATTCTGACAAGGAGGGCCAGTTGTGCATCAGGTGGACTGAGCACCCAGCTGTCATCCATGCGTCTCTTGGGACTCATCGTCAGATGTGTCCTTCATGTCCAGAGGCTGCTGCCTCAGGCCTTCCCTGTCATCCAGCACTGTTACCTTCCACACTCCATTCCAGGGGATCTAGAGTAGGACTGGGGCACCCAGCCCCCATTCACCCCCACTCTTGTTATAAACCATCTACATGGCCCTAATTCATATTGGAGTCCCAAATCCAGCTTGTGGGCCAGCCCCGCTGTCTTGTCTGTGTCTACCTTCTATGAGCGCTGCCTACCTGTTTGTGGTACCCTGTGATGGAGGGCCTCACAGCCACACTAGTTACTGTAAGGCGGGCCTGCGGAGTCCCATAAGTAGCATTTGAGGACTCTCCTCTGTTCCCACCAAAGACCTTGTGCCTCTTGTAGTCCCTCCAATGGCTCTGGCCACTGCTTCTTCATCGGATCCTGTTCTCCAGAAGCCCCAGAGAATGGATGGAGCTCGCTTTTGAAGCTGTTGCCCTCCTAGAGTGGTGGAGCTTGGGGGAGTACCGAGGTGGTCCTTCGCACCTTTGAGCCACTCTCTCCTTTCCTGGTACAGAAGTACTCAAGGCTTTGGCCACAAGCCCCTGTGAAGGGTGCCCCACAAGTATGAGCTTGAGGAGGTTGGCGTCTCCCTCTGGGCAGTTGGTAGCTTAGCATCAAGTCAGAGGATGAAAGACAGGGAAGTCTTACAAAACCAGAGACAGGGACAGAGAGGGCAGGTCCTCAGGGTTGGGCCTGTGCTTTGTCCACGGTTTGTGGAAGTGCTGACATCCATGCATTGGGGCCAGTATTACAGACATTTTGTGAGGTACCACCTCAGAGCAGAGGGGAGGGTACCAAGGTGGGGGAGCAGCTGACAAGGTGGGCCTGGCTTTGGGTTTCAAGAGCAAGCAAGGATTAGCTTCAGGCTTTCTTGGCCCCGCCTCCTCCCCGTAAGGCCAAGCCCGGCACACTGCCCTCTGCCCTCTGGGACCCCTGTGAGGCTGTTCAGGACTCACATGAGGAAGACCTAGGGGACAGTATGGAAGTCTGGTACCTAAGAGTCAGGGTCTCAGCGCTGACACAGTTAGTCTGACCTGTGGCCCAGGCAGTTTCGCTCCAGCAGGTTACCAGGCATCTAACTCCAGAACCTCTGACTTTCAGCAAGTTGGGCTGACCACAGCCCCCTCCAGAGTGTTTTTTATGGGTCTGTTCACAGATCTCATTAATGCATGAAGGACAAGGAAAGACTTGCCACAAAGGTAAAATGGAGAGGCTGCCAGTCTTCTTCAGATGACCTTTAAAGCCTGCGCCTGTCCCTGTGTCCCCTCACTTCTTTTTTAATTTCCTGTACTACCTTACATCCAGAAAGGATGGTGGATGAGCGTCTTCAGGCCGTTCTCTGAGAAAGTCGGTCTGCCGTGGACATCCTGTGGAACTGTACTGGCTCTGGGGGGAAGGGAATGCAGGATTTCCCCAGAAGCTCTACACTCCCTGTCCCCAGGACCCACTGCCTGTCACCCCTAGCTGCTAGTGTGCTGAGACAAGAATGACTCACTGTAAAAGAACCTGCCCTGCAGATGACTTAGAGATGGAAATAAAAGGAACGTGACATTTACCGCTTTTTTTTTTTCTATGCAGGACGTGAAGCTGCAATGGCCCCTCCCTCTAGGCTGAGCATGCTTATCCAGGGCCCCAGCCCAAACAACACACAGGGAGGCCATTAATGCCTTCTGGTGGCATCTGTAGTGAACGTAGAATGTCCACATGAAGTTAAAAAAAAAAAGTTCCGTTCCTGCCAGTATTTTTCCCAGAAATTGCCGTTTTGTGATTCCTTTTGATTTTGTGTCTGTATAACATCCAAAATGTCTCTAATACTGGCCCCAACTTCTCTTTTAACCTGACATCAAGCACCTTTTAAATCATGCGTGTGCAAGTTCGTGTATGTGTGTGTGTGCCTCTGTATGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCTAATTCTAAGCCTTGAGGGCAGGGCACTGTTGGGAAGGCCCTCAGAGCTGTCAGGTCTTGGTCTTGCCTGTGACTCTGGAGGTGGAATTAAAACCAAACAAAGTGCTTTCAGTAGAGAGCACTCTTACCCATGTAATTAAATGTTAGTCCTTTCAATGTTAAATAAAGTATAACTTCTAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415:ENSMUST00000113560:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=74.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types