HsaINT0065315 @ hg19
Intron Retention
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:17069]
Coordinates
chr9:132649466-132658275:-
Coord C1 exon
chr9:132658117-132658275
Coord A exon
chr9:132652826-132658116
Coord C2 exon
chr9:132649466-132652825
Length
5291 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
TGTTTCTCTTTGTGTTGTAGATT
3' ss Score
11.12
Exon sequences
Seq C1 exon
GTCAGAATGAAGGAACGATTTCCGTAGTTGAAGGAGAAACATTGTATGTCATAGAGGAAGACAAAGGCGATGGCTGGACCCGCATTCGGAGAAATGAAGATGAAGAGGGTTATGTCCCCACTTCATATGTCGAAGTCTGTTTGGACAAAAATGCCAAAG
Seq A exon
GTGCTAAGACTTATATTTAATACCATAAAAAAAAAAAACTTAAAAAAAATGGAGTTGTTTCTCCCCACAACCATGACTGTTACAGGCAGTTCCTCAAGAGACTGGCTGGCAAGCACCATAATGCACGTTCTCCTGTAGTCTCACGTGGACTTCAGGGTCTGGGCACCTGAATTGCCTTGTCTAGTTTGGGCTGTAATCAAGTTTCACTTGCTGATGAAATTTTATGTGGAAAGCTGCCAACCGCCAACTTACAGCTATGTCATTCAAAATCTGATAAACATTTCTTCTTTTGGCGGTATCTGTAGATTAAAAAAAAAGTTGCATTGTAGCTTCTCATCTTTCTGAATTTAAAAGCCGGCACGCATCATGCAGGTGCCAAAGACTTCCCTACTCTTGTTTATATCTAGTATCCACCATACACTGAGCTACATTAGGTGGTTACAGATTGTAACTTAATAAACTGAACTGTGTTAGTTTGTTAAATTGTATACTCATTCACTTGGGAGGAAGTCACAAGTGAAATAACATCTCCTTCTTGACTAAAGCAGTAAATAAGATTCTTATATTGGCACCAAAAGTGTGTGTTTTTACTTAAACCTGGTCAGCATCCTTGGTAGGGCATCACGAGTACCCTGTTCCATCTACATGATCCCAGACAACCAGCTGAAATCTGGAAAAGTTTGGTGAATTGACCACTTGATTTTTACATTGCATTGCTGATTTTCCAAGTGTCATCAAATTGACAGGTTTTTGTTGTTGTGTTTGTGTTTTTGTTGTTGTTGTTGTTTTGAGACAGAGTCTGGCTCTGTTGCCCAGGCTGGAGTACAGTGGCTCACTGCAACCTCCGCCTCCCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGCACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGTTCGCTCTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCTTCTGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCTGGCCCAAATTGACAGTTGATCAGATGTGCTAGTGCTGTTTAGATGGAGTTACTTAAAAGGCAGAGCGTGTCCCTGCATCAGCTCCTTTTGGCTGTGATTTCCTCTCACACTTGGTTCGGTTTCTGTTGGTTTTCCAAGTAGAGCTGCACTCACGCTTGCCCAGGTGGGGCTATAAAGAGAACGTGGTGTGGCAGCAAATGCTTCTCCCCACAGACACAGATCTCAGCACATTGCTGTTCAAAGACTTTGGGGGTTTGCTTTTGTTTTTTTGTTGTTGTTGTTTTTGTTTTGTTTTGTTTCTGCTTTTAATCATTGGCAAGGTTTGGATTTACTGGAAATTATTTTAGAATTTCTGGCTCATTTTATACAATTAACTGTAGCCAGAATGAAGTAAAATGTCTCACCACATCGAAAGGAATCTAGGCCACATGAGAATTTGCATTTTTAAATTGGCATTGATGTGGGAGGGGAGATAGTGAAGTTGGTCACATGCGTAGATGGTTGCCAGGCATTTCACTGTGCCCATTTCCAGAATCCACCCCGAGATCATAGACAACCCACTACAAATGGGTCAGAATGAAGGTGTTGGGTCAGATTCTCTTTTTATTTGATTTTGAAAATTATTTCCTTGTGTCCTTCCTACTTTCAAGTAGGAAATTAGCCCCTGCCTGCCTCTACATTGTGGGTTCATTTGATCAGCTCAAGTCCATTTAAAGCTGATTTTCCAAGCAGTAGCTGCACATTCGGGCTCTAGAACCTAGTAGGGGTTCTGGATGCTAGGGGCCGTGTTTCAAGATTCTCACAGCCAGTTAACCTTTATTTAGTGACAGCCTGATTTTTTAAAAAACTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCAGGATGGAGTGCGGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCGATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGTGCCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGAATGGTCTTGATCTCCTGACCTCATGATCTGTCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCCGTGCCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCTAGACTCAAGGGCAATGATACAATCCTGGCTCACTACAACCTCTGCCTCCCGAGTTCAAGTAATTCTTGTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGTGCCTGCCACCACACCCGGCTAATCTTTGTATTTTTTTTTTTTTTTAGTAAAGACAGGTTTTCACCATGTTGGCCAGGCTTGTCTCAAACTCTTGGGCTCAAGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGGTGAGCCACCGTGCCAGGCCCAAATTTCTTTTGGATACTTTTGCTGGCATAGTATCAATAAAGCCACCCATCCCGACCCCAGGCCTCTTTGTAGATATTGCAGCAAGAAAATCAGCTGACCCTTCAACCACAAGGATCTGTTTAAATGAGCAGTAGGAAGTTTCCAGCTTTACCCAGTAAACAAGTGAATGGGAAACCTAAGGTATTAAAATCTGACCTTTCTATCCGATGACAAACTCATTTCCAGTCTGTGAACTCCTGGACAAAGCAAACTAACCACTGAAAAACTCGAAAATAGGGCAAGACGACATTAACCTTGTGAAAGTCTGCTTTGAAAAAAGGCATTCTGTCAAGCTGTGTATTTTTTTCTTGATTATTCAAATTTATTTCGTTATTCAAATTTAATTCAGAAAATAGCTCAGTTGGTTTCAGGGGGAATGGGGTGGGAGGGGTTTGGGCACATAAATTTATGATGATAATTTTAAATGTACGATCATTAAGTTGTATGCCTCAGTACTATAACAGGTGAATCTCTGTAATATTGACTAAACAGTTAAAAGATATTTTGTAAATTTCAGGTCCATCGCATCAATGCATGAAATATTAGAAAACCAAATTCCAAAGAATCAGGAATTTCCATTTCCACCCAAAGTATACTTTATTATCTTCTAGCAGTTGTCTGTTAATATAAAAGCAGCAAAATCTCAGCTACTTATATAATTTTCTCCTTTTATTTGAAAGTTACACTTAGAGATTAATAATATGTACAGAGAAGCTTTTCCTGCCTACTCTGTTTATAACTCTGTCCAACTTGCCCACAAACACTGCCCTCCTTCAACCCATCTGATGTGGGCAAAGCCACTGTTTTCTTAGGCCCATAACTCAGTGCAGCTGTTTTATTTTTATAATGCCGGTCAACCTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTACGATGTGCTTATTTAATAATTGCCAAAATATTTAGACTAGAGTAACTTCCGGTGGGTCAATTGGATTGTGACTTTCTTTTGTGGTTTTTTGGTTCTTCGATTGCTCTCTGTTAAATATTTTCATAATTCCCCCCACAGAATACGTGTGTATATACTGCAACTTAAAAACTAAAAGCAGTACTCGAATGAGTTGTTTTAATGTTGTACTTTTATCTGTTTGTTTTATGGGTTCTCCTGCTGCCTAATGACCTTTCTGTTTTTATAACTGCCGGAAAGCCGCGAAGCCTCTCGCATGGGGAGCTAGGTCCCCGCTGCGGCTCCGCACTTGAGTTTATTATAAACTCTGGGGTTCTGAGTAAGTTTTGTTTGAATACAGCAACATGATTGTCTCTTTCTATTCTTATCCTAAAAGACTCTGTCTGGCATCTTTTAGTTGTACCCTCGTATCTGCTTCTCTAATAAATGTTATATTTTTTCTCAGTATTGTGTATTTTAAGTGACTTTTCATGTTTCCAAGAAAATTATTCTGTGTAATATGAATATTTAACTCTTTCATCTCCAGTAATAGGGGATTTTCTAGCCCAATGCTTTTTTAAAAATTCTGCCTCCCACCCCTACCTCCTCCTTTAAATGATGGCACCTCCCCTGTTTCTGATCTTGCGTGCACTCAGGGCCTGAGAAGTCTGTGTTTCTTTTGTTTCTTTTCTCTCTCCTTGAGATGAAGAGCTTTTCACGGTTTATTGCGGAATGAATACAGAACAACAGGTTTTCCTTTTCACCAAAGATTTTACATTGTACTGCTGAAGAGCCAAGAGTTTCCTTCTGAGAGAATTGGACCTTCATGTTCCTTGTACCATTCTAGGAAATTGATGCATTTCTTTTCTTTTCTTTTTTTTCTGGAGTTGAATTCTCACTCTGTTGCCCAAGCTGAAGTGCAGTGGTGTGATCCTGGCTCGCTGCAGCCTCGACCTCCCTGGGCTCAAGCCATCCTTCCAACTCATCTTCCCGAATAGCCGGGACTACAGGCGCATGCCAACATGCTGGTTAATTTTTTTTTAATTTTTTGTAGAGATGAGGTCTGGCTATGTTGTGGCCCAGGCTGGTCTTGAACTCCTGAGCTCATGCATCCTCCCTCTTCAGCCTCTCAAAGTGCTGGGATTACAGGTATGAGCCACTGCACCCAACCTCCGTTTCCTTTTTTTTTTTTTTAAGACGGAGTCTTGCTCTGTTGTCCAGGCTGGAGTGCAGTGGCCCGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTGAAGCGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACGCCAGGCTAATTGTTGTATTTTTAATAGAGATGGGTTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTGCCTGCCTCAGGCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACGGCGCCCAGCCCCGGCCTCCGTTTCTTACTTTCTCTCAAAACTAAACTTATGAGAAAGACGAGTTGGGGCGGATGGCCTCATCAGTCTCCTGTTTGGGCTTCTCTTAACTCTGAAGGAAAGACCAGCTAAAGGCTAGAGAGAAAACCGTGAAAGTTCCTCATCTCAGACCCGCCCTGTGGTAACCGATTGCTCTAAGACGCCCCCTCCCATCCCTCCCCTCCCACTACCCTCCCCTCCCAGGGCGGTGCAGTTTGTAGCCAAGAGCAAAATGCCCGCCTGGAACCCGCGCCTTCCTCTCTAACAGAGAGTTTCTCTTTCTGTTTCTCTTTGTGTTGTAG
Seq C2 exon
ATTCCTAGAGGGGAGTGCCTGCGAGCCTCGGGTGAGCCTTCCTGGAGGAGCCTCCGTCTGCTTGTTCCCACAGGCCTCCAGCGCCCTGCCCTGTGGACAGCCCACCCCTCCGCAGCCCCATCCCTGCGGGGCGGTCTCTCTCTCTCTCCAGCATGCTCCCTGCGGCCCTGCCCTCCCGCCCAGCCCGGGCCACCTCGTGGGGGACAAGTCTCGCCAGCGCCCACCCCCATGGCTCGGGTCAGTCCTCATCGCTCCCCCTCCCCACCCCGCGCAGGCCACTGAGACGGTGGGACACACGCCCCTACCTGCTCCTTCCTGGGCCCTCAGTCCACCCGGGCTCGTCCTGGCAGCCCTTCCGCGCTTCACACAGTGCCTTTTGTGAAAGTGTCATCACGGGTCCCCTGAGGAGACAAGGCAGGTCCAGCGCACATCAGGCGGACTGAGCACTCGATGTCATCCGTGTCGATGTCATCCGTGTGTCCCAGACTGTCTGCTGTAGAAAACACTTCCTCCTCTCCTGAGTCTGTGAAGTCCTCAGTGGTCCTTTTTGGATTCTAGGCTTGCACCTCATACTAAACATTGACCCTTTCACTATGCCCTCAACCTGGGAGCATCTGGCAGGCAGGGGGGCAGGTACACACACACCCACAGGCACACCCACCAGTACACACGCGTGCGCATACACACATTTTGGTTTGACGCCCTGTTTTCAGTGGCCTGGGGAGGTCCACACTGGAAGTCGAATTCCAGCTCGCCTTGTTGACTCGCCTGTGTCCACCGGCCATGAGGAGCCCACGCCTGTCCTCCCCATCACTTTCCTGTCCCTGAGAACTGTAGATCATGCGCTTGTGAGCGAGGCCCTCCCCTCTGCACCAGCTCATTGCAAAGCGAACATCCTCTCCTTTCCAGGAGCCCCAGGATTAGCATCTGAAAAGGGTAGCACTTCCTTTTTTGTTGTTGTTTTTTTTTTTTTTTTGAGACGGGAGTCTCGCTCTATTGTTCAGACTGGAGTGCAGTGGCATGATCTCGGCTCACTACAACCTCCACCTCCTGGGTTCCAGCGATTCTCCTGCCTCAGCCTCCCAAATAGCTGTGATTACAGGCGTGCACCACCACGCCCGGCTAATGTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCTACCGCACCCCGCCGAGGTTAGCACTTTCATCACCAAAGACCCCGTGCCTCTCGTGGTCCTTTGAGGGATCCCGCCGCCACCACCCTTGTATTTTATCACGTGCTCTTCAGGGCATGTGGAATTCGTTGAGTTTGCTTTTAGAGCCAAGTTTCTTTCCCTGTGTGGGTTTTTGAGGAAAACCTGAGGTCCCCTAATCTGTGGCCACCACCCCCCCCCCCCGCCACGCCTTAGAGCAGAGCAGCCCCTCCTCTCATTTGGTGCAGAAACAGTCAAGAGGAACCATTGGCCTAGAGCTCCTGTGACCGAGAGCGCCACGGAAGCCTGGGGATGACGTCGGGCAGCTTTATTCTTTGCTTGGCTTTGGTAACTAGGTGGTCCCCTCAAGCATCCTCAGTTCCTCTTGCTGTTTATGAATCTAAGACAAGGAAGTCCTATAGAAGCCAAAGGGACAGGGACGGAAAGGACAGGTCCCAAGGGATGGGGCTGTCTTTACTTGTGGAAACCAGGAAATTGCTCCTCTCAGCCAACCAAGGTTGACCACACACCACCCTTCCGGAGCAGCTCAGTCAGCCCTCGGGGACGAGAAACCACAAGCGCAGAGACGCTGAGGCCCAGGCAGGTGAAGAGGAAGTGGCTTTGGGTTTTTAAAGTAGGTGAGCGTGAGCCTCTCTGACTGCTTCTTCCCCGGGGGGGACTGCAAACCGCTCAGGGTTGCGGCAGAGCCATGGACTTCCGGTCCCTGCAACGGGTGACCTAAGCGTGGTGCACCCATCAGTCACGCAGGAGGACTGACTTGACAGACGAAAGACAAGCCCGGATGACACAGGGTGAGAAGAGTCAGGGCCGCACCTCTGTCCCTGCAAACCAACAGGTGCATGGTGAGTGTGGCAGTCCCCACAGCTCCACAATGGGCTCCCCCGCCAACGGGGACGACAGGGATCTTCAGGAACTTCTGACCTCACCAAGTCAAGTGGACCACTCTCCACTCCACGAGGATGTGAAACGGTTCTTTAAAATGGGATTTTAGAGCCTCGGGAATGCATGTGCGTCACATCTTTCATATTATGGGTCAGGATAGATTCATTTCTTGCAACATAGTGGAAAAGATATAAGCTGCAGTAATTTGCTCTTTGAATGACCGTCACCCCCAGTATAGGATATGCTTGTATCCCCCCGTCACTCCTCCGCCTGTTTTTTAAACTTTTCCACCACCTGCGTCCAAAAAGAATGTTATAGCGAGTGCTCTTAAATGTTGAACCTGGGTGTTGCTTCCGGGCCAGTCTGCGTGGCTCCATGAAAAGCTCACTGCTGCCCCAGCCGGGCTTCTTAGAGGAGGTCAGTTGTCCTATGTATCATCATTTACTCTGGGAATCCTACTGTGAAATCATGTCTGTATTTTTCTGGAGCAGTTCACATAGAGTAGAATGTGGAATTTCCCGTGAACGTCTCCTTCCTCCCCCGTATCTGCCGCCTGTCACTTCGCCACCGTGCTAGAATACTGTTGTGTTGTAAGATGACTAATTTTAAAAGAACCTGCCCTGAAAAGTTCTTAGAAACGCAGTGAAAGGGAGGAACTTGTCCTTTACCCAGTTTTTCCTTTGTAGGATGGGAAAGTATAAAAAGGCACAGAAGGTTGTCATGGGCTGTTCCTTGGGGGTTTTTATCCTGCTCACCGTGGAGATAAGCCTGCGGCTTGTCTAACCAGCGCAGCGCAAAGGTCTCGATGCCTTTTGGTAACATCCGTCATTGCAGAAGAAAGTTTACACGACGTCAAAAAGTGACGTTCATGCTAAGTGTTTTTCCAGAAATATTGGTTTCATGTTTCTTATTGGCTCTGCCTCCTGTGCTTATATCATCCAAAAACTTTTTAAAAAGGTCCAGAATTCTATTTTAACCTGATGTTGAGCACCTTTAAAATGTTCGTATGTGTGTTGCACTAATTCTAAACTTTGGAGGCATTTTGCTGTGTGAGGCCGATCGCCACTGTAAAGGTCCTAGAGTTGCCTGTTTGTCTCTGGAGATGGAATTAAACCAAATAAAGAGCTTCCACTGGAGGCTTGTATTGACCTTGTAACTATATGTTAATCTCGTGTTAAAATAAAATATAACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-FNBP1:NM_015033:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(86.3=81.5)
A:
NA
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)