MmuINT0065310 @ mm9
Intron Retention
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122259330-122261024:-
Coord C1 exon
chr3:122260821-122261024
Coord A exon
chr3:122259489-122260820
Coord C2 exon
chr3:122259330-122259488
Length
1332 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTCTTTATTTCCATATTAGCCA
3' ss Score
5.04
Exon sequences
Seq C1 exon
GATTCTCAAATGGTAGTAGACTCCTTCAAGTCTGGCTTTGAACCTCCAGGAGACTTTCCATTTGAAGATTACAGTCAGCACATTTACAGAACCATTTCTGACGGGACCATCAGTGCAGCCAAACAGGAGAGTGGCAAGATGGATTCCAAGTCCACAGTGGGGAAGGCCAAGGGCAAGCTGTGGCTCTTTGGAAAGAAGCCAAAG
Seq A exon
GTAAAAACCATAAAAATCCCCATATGCTAATCAAACTCTTACTTAGTAAGTTGAAAAAGACGTTGAATGGATAATAATTTATGACTGATAGAGGAGTAATTTCATTCAGCTTGAATGATTCAATTAATCTTTCACTAATTAGAAAACAGTCTTGTACCTTGAGCACTTAATAATGTGGAAGAATATTAACTGAGTTTTAATATCTAGTTAAATTACATGTTTTTACAATTTTATTTATATAGAGTGTCAGAATTCTAAGGCAATGTTTTATTGTTACTGCTTACTACAGTGGAGATTCTTAGTTGGGATAAATGATAATCAGCGTCAAATTACCTGCTATAGCTCATACTACTATAACCTTTTATTATCCATATGCAACTTTAATGAGAAGGGCTTAGTGTTTTTGATTTAACTTCAGCTTTTAGGAACCTCTAGTTTACTAAGAGAATCTTGCTCTTCTTGTCAAGCCTCAGATCTTGATGTCCTGTTAATTTTTGGAAGCTAAGCAAACATAGCTCAACACAAGAGCAAATAGGATAAACCAGCACTTTGTCTTTCTTGTCGATTTAGTCGTTGTGTTGGACCAGTAAGGAGAGATGTATTCCTTCTGTCTGATACACTGTAATTTTTAAAGTGTGCTTAATTAATTTAATTTAGTACTTAGATCTTGGCATATGAAAGTATATAACATTTAACTCAAATTCTCTAACTGCTACTGTCTTTAAAAAACACATTTATTGGTAACTCGGGCTTTACTTATGCTTTTAATAATACTGTCCAGTGAAGAGGTTGAGTGGTGAGACCTCTCTTGGTCACAGCAGAGGAGCCAGAGCTTACAAAGATGAGAATACCGGTGCTTATTTAAGAGGAAATGACCTGAGAGGAAAGCTAGGGATGGTGGGAAGATTTGCCTATTTATAGTAATCAGATACAGTTTTAGAAGTATTTTGTGTGATAACTTTAACTATAGTTGATGCCTTTATCTCTTGACAAGTACAAGTTAAATATAACCTATATAGAATCCATTATGATGCTAACATGCTGAAATCCAGAAAAAATTATTTTAGTCTAGGTTATATTGTTCTAATATAATTTGTATACTCTTTATTTTAATCTATCAGTTTGTAAAAAAAAAAAAGTGAAATGGTATTGTTTAAAAGTAATTGGCTTTTAAAAGATAATAGCTTTAGCAAAACTTTGTTTATTCTCTATTTTCATAGAAAACTTTAAAGTGTATTTTGTGAAAATATGTTGCCAGAAATAGAATTTTCATTTAGGACAACAAACTATGCACATTTGGCTTATTGATTCCTTTCTTTATTTCCATATTAG
Seq C2 exon
CCACAGTCCCCACCCTTAACCCCTACTAGTTTATTCACATCCAGTACTCCTAATGGGTCCCAGTTTCTCACACTCTCCATTGAGCCCGTGCATTATTGTATGAATGAAATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGCCTCAAAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-Fnbp1l:NM_001114665:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.318
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCAAGTCTGGCTTTGA
R:
CTCTTTTGAGGCTTCTGAAAGAAGG
Band lengths:
342-1674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: