MmuINT0073451 @ mm9
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108505783-108514498:-
Coord C1 exon
chr3:108514195-108514498
Coord A exon
chr3:108506005-108514194
Coord C2 exon
chr3:108505783-108506004
Length
8190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTCATATATAATTCTGCAGAAT
3' ss Score
7.83
Exon sequences
Seq C1 exon
AAATGTTGCTGAAGTGCTGCTGAAGGGGCCAGCGATGCCAGGATTTGGGACACATTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTTCATTATTAATAAAGAAGAAGCAGGGGCTTAGGATGTATTAACACCAGCGCATTACTATACTAACCGGACAGTGCTCTGCAAAGCCCTCTGCACTCTAAAGGACTGGACTGGCCCAGGACACAATAATTTCCCATTTTCTCAGCTTATAATATGACTGGATGGAGGGAAATTTGATAAGCATGAGGGAAGACCATTCCTTTCATGTCCGCTACAG
Seq A exon
GTAAGACTGCCGCTCGCTTAGTGCATGGCTGTTCATCTGTTTAGATGTGCATTTAATTCTTGTCCAGTTCAGTTTTTAATTTCAAAGTTCTCAAAATATACCAATTAAATTTAGTCTGTTCTGCAAGCAGAGTTTTGTGGTAGTGGAAAGTTGTGTATCTTTTGTGGGAAGATGGCAGTAGAGACTGTACTGTAATTTATTAATGTTCTCTGGGAGAATTTTTGCATAGCTGCTTTATATTTTGTAACTTGTACATTAAAAATACAAAAATGGAGTCTATATTTTACTTTTGTGGGTACTAGGTGGACGAACTGTTGTGACGGCTTCTAAGTGGTGATCTTTCCTAGTTAAGCTTTCAAGACAGACAAGTTAAATAAAGTGGGAATGAGTATATATTTTCTAAACATGGCAAATCAATAGCCAGCCTAATATTTAGTAATAAAATACTAAAGACATTTCTGATAGAATAGGAACAAAGCAAACATATCTCTGTTGTTATCTGACATTTATTCTAGAAGTTCTAGTCAAACCAGAAAATGATTATTTAAAAAGATGAATATATAACAGTAGATTCATTCTCAAAATGTGTTAATGCAGCAGACACCAGAGGCTCATTAGTGCATGCCATCGTGCATAGTGGACAGAACTGAAGTCAGTGTCTGTCTCTCTCTGTTTCTCTCTTGCTGGAATTGAACCCATGGCCTTGTGTATGGTAGGCACGTGCTCTGCCACTGAGTTATAGTCTTGGCACTCAAAATCTCCTGGGTGAAGGTGTTTGTTATTAAATCCTCCATGTCTTAATATGTGTTTATTAGGAGACTTACACTGTGAAATAGATGGTTTGGGTTAAGGCAGTGCCAAGAAAGGTTCTCTTCTCCCCTCCTTCCCTCCCTCCCTCTCTCCATCCTTCCCCTCTCTCTGTGTGTGCACATGTGTGTTGTGTGCATGTGGAGGCTAAGGACCACTTCAGTGTCATTTCTCTGGTGCCAACTACAGTTTTTTAAAGATGGGTCTTTGATGGCCTTGAGCTCACCAGAAGCGGGTGGTAGATAGCAAGCCTAGGGCCCCGCCTGTCTCTGCCTTCCAGCACTGAGAGTCCACGTGTATGTATGTAACACCTGGGCTTTTAATGGAGGTTCTCGACTCTAACTTTGTAACTTTAAAAACATATTACATTTATTTAGTGTGAATGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGCAGGGCTGTGTATGCCATGCTGTACATTAAGAAGTCAGAAGACAGTTTGTGTGAATTGGTTCTCTCCATCCACAGTGTGGGTTCTGAGGATGAAACTCAGGTCACCCGACTTGGTGATGAGGACCATTACCCACTGGGCCATCTTACCAGCCTAGAACTCATGTCCTTACACAAGCACTTTGGTGAGATGGCTCAGTGGAAAATGCACTCGGAGCGTAAGCTGATAACCTGAATTTAATCCCTTGGTGTGCACATTGCCTTGAGAGAACTGACTCTCAAGAGTTGGCTGTACTGGTGTGCTGTGTACATGTATATAAGTGCGTGCGTGTGTGCGTGCGTGTGCGTGTGTGTGCGCGAGTATGTGCATACAGACACAATAAGTAGATGTACCTTTTTTTTTAAGTCTGAGGTATGTGGCTCCTACCTGTAATGTCAGCACTCAGGATTGAAGCAGGAGCATTGCTATGAGTTCAAGGCCAGCCTGAGCTATACTAAGTTGTAATCTAGGCTATAGAGTAAGTAAGACCTTATCTCAAAAGACAAAGAACAGTGTAAAATAAAGGAGAACGGAGGGCATTCGAGCTTGGAAAAGCATTTAGTGTGAAGTACCATCTTGTTAACCTGAGGCTGGGTCTCCCACACCTGAATGTTTACTCCCCTCTTTTCCACACTCTGCCCATCCACAGCCTTCCCACCCTGCACTGGTTCACGCTCCCAGTATTCCCCCCTCCACTCACCTTCAATTTGCCACTTGGGGACTCAGTGAAAACAGACGATCTGTACAGCCCAGGGTGGCCCCTAGATGCCTGGGCACAAGCCAAGCCCAACACCTGCCTTACCTAAAACTGTGCCATACACACCCGACGCTTGCCTCTGTCCGTGGTTCTCCACCTTGTACTTGGAGCCCTGCACGTTGTGCTGCTCCGTGTCTCAGTGCTTTTGCTTACGCTGTGCGTGGTGACATGAATCCCCTTCCTGCTTTCTTGGCAAAGCTAGTTCTACTGGGTGTCTAAAAGATTCCGCCCAGAGACCACAGATAGGAACCTTTTCTAAGCTCCTTAGTTTGCTCCCATTGTGACCTGTGCATTCTCCTGTCTGGCTGTCCTTCCTCCTTTCCGTTCCCTTATTTCTTTGGTTGTTAGTGCCTCAGGGCCCCTCAGTTGCTTAGCACTTGTTTGCCTCCTGTCTGTTGAATGTGGTTGGACATAACCATCAGATGACCCTGGATGTTTATCTGTCTGATTGTTGTGTCACACCTCTGATACAGTATAAAAACTGCACATAAGTCAGAAAGGATTGGACCTCTGCCTGAGGACTATCTTAGCTTTCTTCTTTTCCATCACAGGTCCCACCTGGTTTCATGTTGCTATAGGACTTCACTAAGGAAAGACTTGTAACTGTCTGTAGTAAAAATATACTGAACACATCCCTGGCTTTATCAGCGCTCCAGTAGCCCTACCTTTCTTCCTAGTCCTTAATGATATTCAAAATACTTTTAGTAATGCACATTAAGTGTATGAGTACACACGTCCTAGAATTTACTTCAAGATAATCTGGGGTTGGAGTCAACTTTGGAGTAGAGGTGAAACGTTGATTGGTTGGTAACTGAAGTTGGAAGATGGGTATGTCATATTCATTACACTTGTTTTTATAGTTTTGTATTTCTTTGGGACCTGTCCTTGTTTGTCCTTGTCACATAAATAATAACCACTTCAGTATTTTCATATTGTAAAAGTAACACTAGTGCATTCAAATAAAAGGAGCAAACTACAAGCTGGAGAGATGGCTCAGCAATGAAGGCTTTCTGCTCTCACAGAGGACACGGGTTTGATCCTAGCACTCGTGTCAGGTTCACAACCACACATAAGCCCGTCCAGCTCCAGGGGATCCGCTGCTCTCTTCTGGCCTCTTCCCGCATCCACACACGGCACACACACACACACACACACACACACACACACACACACACGGTTGGGGGTGTCAAAGGAGGCGGTGGACAGTACTCCTGAATGGGTCCTAAGTCCTGACTCCCATCATCGATCCTTGGAAACTGTGGAGTCCCTTTGCGGAGTCAGATCTGAACATAATCTGTATTATTAGATATTTTTAAATGCAGCATTGGCATTTTTACCCTCTTTTGCTTTGACTGATCTAACATGAATGTAAGAAATTAAAATGAAGGAGGTAATGAAGATGCTAGATGTAGAGATGAGAAAATGAAAGTTGAGAAGTCAGATTAGCACCAGTGAGGAGTTACACTAAGTGTTTGATCCATCTGTAGCCATGAAGACTGTCACACAATGCCTGACCAAAACTTGACAATGGGAGGGTCTGTTTTGGCTCACAGTTTGAGTACGGTCCATCAGGGAGGGGAGTGGTGGGGAGGGCGTGGCCGGAGCCTGAGGCAGGGGCTGCCTTCAGTCCTTAATCAGGAAGCGGAGAGCAGTGACTCTGATTCTGATCACTTCTCCGTTTATTCAGACCAGTATCCCAGCCTGCGAAAGGCACTGCTCCGGGTTAGGCTGAGCCTGCCTCAGTACAGAAACCTTCACAGATGCGTTCAGAAGCTTTCTCCAGGTGATCCTGATTGACCAAACCATCGCAGATGATAGGTCCGCTTACAGTTATTCAGAGTAGTCCCTTGCATTATACAGCGAGACAGGCCACCCAGAAAGGCTAAAGAAGCTTTGTAGGAGAGGTATTGCTCTGGTCTGTTTCTACATCTGAGCATGTTCTTGTTTTCAACCCCACTGTTAGACAAATGAGGCTACTCTGTTCTCTCCCAATGACAGACAGGATAGGAAACTACTTGCTGTCATTATTATTATTATTATCATCATTATTATTTAGTGCTCTTCTGAAAGTGTAGAAGCTTAACTTGCAGTGTTTTGCCGTTACAAAATTTGATTGGAATTGGGGGTTTTGGCATAATATTAACTTGTTTCCTCATAACATATAATAGAGCCATAGTATGTCTCTGCTTTAACATTCCCCAGGAGAGTTTCGAGTTTTATTCCAGACATTAGCTGCTATAATAACTTAGGATTTCCTATGATCATTCTCATGATCTCAGAGGACAGGGAGGCCAGCAGGGTTCCAGTTGGCTGTTATGGTTTCTGGCGACAGTTACAGAAAATGTCTTTTAAAGCATGTAATTTGGGCCTACAGTCTGTGGGTAAAGTGGGTTACAGCATGAGGCCTGAGTCCAGCACCCATGTAGCAGCTGGGTGTGCTAGCACACGTGTGTCACCTCAGCACTGGGGAGCAGACACAGGTGAGTCACTCACTGGCCGGACAGTATGGCCAAAGTAGGCAGCTCTAGGTTTAGGGGCAGACTGTCTCAAAAGTAAGGTGGAGAGCGATGGAGAAGACACTGACTTCAGCCTCTGACTGCCTAACTTTACCACAGACAAGCAAACCTACACATGCATGCATAAACAAAAGTGTAAGTCTATTTTTAAAAATATTTTTTGTTTTGTTTTCAATAGATCCTGACCACAGTTTGTCCTCCCTCTAGTCCCCCAGTCCTCCCCAACTCCACTTCTCCTCTCCCCAAGATCCACTCCTCCTCTATGTCCTTTCAGAACAAAACCAGCCTCACAGAGACTTCTTACTGTACCAAGATACGATAGGACTAGGCACATACCATCATATCAAGGCTGGGTGAGGCAATCCATAGGAGGAAAAGCTTCCCAAGGGGAGGTCAAAGAGTCAGGCTCCCGAACTCCCACTGTTAGGAGTCCAACAACCATAACATAAGCAGAGGACCTAGCGCAGACCCACACAGGTTCTGTGATTGCCATTTCAGTCTCTGTGAGCCCCTAGGATCCCCGATTAGTTGATTTTTAGTTGATTCTCCTGGTGTCCTCAAGCCCTCTGGCTTCTACACATCCCACTCTTCTGCAGGGTTCTCTGGGCTCCAAGTAGAGGGACCCAATCGCTCGAGATCACCATTTTGGGCTCTCTCTGCCTAATGATGACTGGCTGTGGGTCCCTGCATCTGCTCCCATCAGCTGCTGGCAGAGCCTCTTGGATAACTATGGGGCTAGGCACTAATCTGGACTCGTGACAGCCAGTGTGGTCTCCCAGAGTGTGTAACTCCCAGAGTGTGTAACTCTTACGTTATCATTTTGTCTACAGCTAAATTTTGTTGAGTATCATGTCATTTGGATAGATGGTATCGTGTTGTATAAATAAACATGCAGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTCTCAAAAAACCAAACAAACAAACAAACAAACAAACATGCAAGTCCAGAAGGTCATATATTTGTACTAATGATATTTTATATGGATGTTTGCTTTATACAGGTGGCATTTGTTTTCTATGGATGTAGACAAACATGTAGCCCTCATTTGTAAATGCCCTCCATAGGAATAAGTGTGTTTGTCTCTGATGTCCTGTGTAATCCAGGCACCCTGAATTGAGGGCACTGTTGTCTGTGACTGTTTCCCTGCTCTCTCTACCTCTGTGAAATCATCTGCCATGTTTGGTGGCACATCATTCATTCATTCATTCATTCATTTATTGTGTGTGGGTGTTCTGTATGCTGGTATTTCTGAGCACCATATGCCCAGTGCCAAAGGAGGCCAGAAAGAGGGTGTCTGATTCCCTGGGACTGGAGTTCCAGATAGCTATGAGTCACCAAGGAGGTGCTGGGAATTAAACCCAAATCCTCTAGAAGACCATGGAGTGCTCTTAACCACTGAGCGTCTGTCCAGCCATGCTTGTAGTTACTTTGACCAGTACTCTCCTGATGGATACTTATTAGCAACATTTTAATGCTGTAAACCCCCTTGTATAGACATCTAATGAAATTCTGAAACTTAATTCTTAAGTTCTGTTCCTAGAAGGGAAAATGCTTAATATATATTTCATACAATTAGAATATTTGGTTAAAATTTTAGAAGAAAGATTTTATATATATATGTATATATGAGTATATATATACATACACATACACACACACACACTCAAATATGCATACATACACGTTTTCTCTTTTCCGAATGGTTTCCTCTGATAATTCTTAGCTTTTCATTGGTTTCAATATTAGACAAACACAACAGGTTCAGATGACTCATCTAGCACCTTCCATGTAAAGGGAAGTTTTCAGTCATGAAAGACAAGAAGGAGCTTTATTAATGTCAAGCCTGCATATAAAGAAATGTAAATAGCTGTTTGAGGAGGTCTTTACCTGTGAATCCAGCACTCTGGAGACTGAGGCAGGAGAATCTCCAGTTTTTAAGGCCAACATGGGCTACATAGTGAGGCTGACTCAAGACAAAGAAAAGAATGAGGAAAAAAAAAATCTACAAGGTTAGCTGACTAAATCCCTGCGCCAGACTGGGCCCAGCATCAACATTCCGTCATGGACTGCGGAGGGGCTCTTGAGACCCCACCTCTTCCTGAAGAGCTGTAGGCAGTTAACAGTTGCTGGGAGACAGGAGTTGCATTGGTTGTAGCCACTGGTAAAGGTGCTCAGCTCAAGTAAAGGCCCCTCCTCGTGCTCTTTCAAGCAGCTCTAAGTTCAGTAGGTCAGCAACACCCCCCACACCCTTGCTTGTCGGGAGGAAGAATGGCTGGGCAGTGCGGGGAGGGGGTAAGAGAGGCTGTGGGCAAGAGTGCGCGTCTACTGTGTGGCACTGTGATGAGAGGATAAGTTAGCTCTAAGGATGTAGCTGGTTATATCCTAATTGGACTGATGTTATCTTCCTGTGTACTTAGTTCTTGCTTCCTCTGTCTAATTGATTTCATCTAATGCTGAAACAAAATGTCAGAACCTTGAGTATATTAACTTGATTGCCATTATAAGCTCATGTGTCCAAGGCACTGTCACCATTATAGAACAAGCACTAAACATTGGCTAGGTCTTTAGAATTGTTAAAAACCTGAGTATAAAGTTGAATGTTACCTGTTAGAGATTTGGGGTAAGTTTCCTGTTGTAAATCCAGAGTCGGTTTTGAAGCTTGCAGCTGGCTCTGTTGATCTGAGTCCTTACTTTTTCTAACTCCGTCAGATTTATTTTCTACTTTATAAACCCTAAGGACAGCCTGGTGTGCCATTCTCAGGAGGTCCATACATCTCCTATGTCAGTTTCTCATTGCTCTAAAGGTCCTACCTTGACTAGACTGGCCGGCCAGCAAGTCTGTGGACCATTCCTTCTCCAGTGCCGGGTGACAAGCATCTGCCACATCTGGCATTTATATATGGGTCGGGTCCTCATGCTTGTAAGGCAGGTGCTGTTATCAGCTAAGCTCTCTACCCCTACTGTGCCAGCAAAGCCCTCCATCTCCACCTCAGTTACTGACATTGGGATGTTTCTTGGCCTTTAGTTCTCTGTGAATCAAGATATTTGGTTCCTTTATTCTTTTAGACTGTAATTGCTTATGTGCGGTAAAAAATGGAAAGGGAGTAAGGCGTATGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGATGAGACTGATGTAGGTGGATGGAATAATGGATGGGTGGATTGAAACACTGCTTTAGATTGCCTCACTAGTAAAGTGGGTTACTCTACACAGGCCAGTTAGAACAAACTATATAAGACATTTAGCAACTCAGTTGAAGAGACCTCTGAGGCTCAGAAATCGGAGTAGGCACATTGGCTGTTGCTACAGTTAAGTTTACTCTTTTGTCAGTAACTTGTTTGTAATTCAACTAAGTGTTGGTTTGATTGGGGGTAGCCACAAAGTCCACATTTATTATAGTATTGGGAGTTAAAATCACTGATCCAGTTGTAATGTGTCTGTCATATATAATTCTGCAG
Seq C2 exon
AATGGAAGCTTCTTGCCTTGAGCTGGCCTTGGAAGGAGAACGTCTATGTAAATCAGGGGACTGCCGCGCTGGCGTGTCATTTTTTGAAGCCGCAGTTCAAGTTGGAACTGAAGACCTCAAAACACTCAGTGCTATTTACAGCCAACTGGGCAATGCTTACTTCTACTTGCATGACTACGCCAAAGCGTTAGAATACCACCACCATGACTTAACTCTTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883-Gpsm2:NM_029522:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=WD(100=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: