RnoINT0067134 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211513401-211519970:-
Coord C1 exon
chr2:211519667-211519970
Coord A exon
chr2:211513623-211519666
Coord C2 exon
chr2:211513401-211513622
Length
6044 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTCATATATAATTTTGCAGAAT
3' ss Score
8.54
Exon sequences
Seq C1 exon
AAATGTTGCTGAAGCGCTGCTGAAGGGGCCACAGATGCAAGGATTTGGGACACGTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTTCATTATTAATAAAGAAGAAGCAGGAGCTTAGGATATATTAACACCAACTCATTAATGTACTAACCGGACAGTGCTCTGCAAACCCCACTGCGCAGTAAAGGACTGGACTGGCCCAGGACACAATCATTTCGCATTTCCTCAGCTTATAATATGACTGGATGGAGGGAAATTTGATGAGCATGAGGGAAGACCATTCCTTTCATGTCCGCTACAG
Seq A exon
GTAAGACTGCCGCTCTCCAGTGCATGCTGTTCATCTGTTTAGATGTGCTTTTAATTCTTGTCCATTTCAAGTTTTAATTTCAAAGTTCTCAAAATATAGCAACTAGATTCAGTCTGTTCTGTAAGCAGAGTTTTGTGGTCGTGGAAAGTCGTGTATACTTTTGTGGGAAAATGGCCATAGAGACTGTACTGTAATTTATTAATGCTCTCTGGGAGAATTTATGAATAGCTGCTCTATATTTTGTAACTTGTGCATTGTAAATACAAAAATGGAATCTATTTTAAGACTCGTGGGTAATAATAGGTGGACAAGCTGCTGTGACAGTTTCTAAGTGGCGATCTTTCAAAACAGACTAGTGAAACAAAGTGGGAATGAGCAGGTACTTTGTAAACATGGAAATCGACAGCCAACCTGATGTTAGTAATGAAACACTAAGGACATTTCTGCAGAATAGGAGCAAGGCAAGCATTTCTGTTGTTATCTGACATTTATTCTAGAAGTTCTAGTGAAACCAGGAAACAGTCATTTAATAAGCTGACTATGTAACAGAAGATTCATCCTCAAAATGTGTTAATGAAACAGACACCAGCAGCTCATAGTGGTGGATAGAGTTCAAATCAATGTCTGTCTTTCTCTGTTTCTCTTTTACTAGGAATTGAACCCATGGCCTTGTGTATGGCAGGCACATGCTCTGCCACTGAGTTATAGTCTTGGCACTTCCTGTGTGAAGGTGTTTGTTATTAAATCATCCATGTCTTAACGTGTTTAATAGGAGATTTATACTGTGAAACAGACAGGTTGGGTTAAGGCAGTGCCAAGAAAAGTTGTATTCTCTCCCCCCACCCTTTTCCCCTTCCGTGTGTGCACGCGTGTATTATGTGCCTGTGGAGGCTGGAGGACAACCTCCGTGTCATGCATCTGTGTGTGCTGGGGGCAGAGCTGTGTGTGCTGTACAGTTAGAAGTCAGAAGTCAGTCTGTGGGAGTTGGCTCTCTCCTTCCACAGTGTGGATTCTAGGGATGAAACTCAGGTCATCAGACATAAGCCTAGAACTCATGTCCTAGCACTTTCCTCACGTGACCATCTCCCCCCTTCCCCCGCCCAAAAAGGACATTTTAATTACAATTTTAGAAATCTCAGGCTGGTGAGATCGCTCAGTGGAAAATGCACTTGCAGCATAAGTTGGTGACCTGAGATTAATTCCCTGGTGTGCACATTGCCTTGAGAGAACTGACTCTCAAGAGTTGGCCGCCCTGACATGCTGTGGTACATGTATGCAAGTGCATGTGTGCCTGCATACAAACACAATGAATAAATGTACCTTTTTTTAAAAAGTCTGAGGTATGTGGCTCCTTCCTGTAATCCGACTCAGGATTGAGGCAGGAGCATTGTTGTGAGTTCAAGGCCAGCCTGAGGTATACCGAGTTGTAATCTAGGCTATAGAGAATGGAAGGCATTCGAGCTTGGACACGCATTTAATGTGAAGTACTCTCACGCTAACCTTGGGCTGTATCTCCCCAGACCTGAACTTTAACTTCCTTTTTTTTTTCCCACACTCAGTCATGAGTACTTAGATTCATCTGCCCATCTGCAGCCTTCCCACCCTGCACTGGTTCACCCGCCCAGTGTTCCCCACTCAACTCACCTTCAATTTGCCACTTGGGGGCTCAGTGAAAACAGAGCTGACTGAAGCCCAGAGTGGCCCCTAGATGCCTGGGCACAGCCAAGCCGAACACCTGCCTTTGTGCCGAACGCTCGCCTCTGTGGTCTCCGACTTGCACTTGGAGCTCTGCACATTGTGCTTGCTGCTCTGTGTCCAGTGCTTTTGCTTACACTGTGCATGGTGACAAATCCCCTTCCTGCTTTCTTGGCCTTGTTAATTGTGCTCAATACCTGAAAGATTCAACCCAGAGACTGCAGATAGGAACCTTTTCTAAGCTCCTTAGTTTGTTCACATGGTGACCCGTCCATTCTCCTGTCTGACCGTCTTTCCTTCTTTACTTTTCCCTCATTTCTTTGGTTGGTAGTGCCTCAGGCAGCCCAGTTGTTTGCTGTACATGCCTGTTGAATGTTGTTGAACATGGCTGTCAGATGAACCAGGGATGTTTATCTGTCTGATTGTTGTGAAAACTGCTACACACACCCTCTGATACAGAATAAGAACTATAGATAAGTTGAAAAGGTTTGGACTCCTGCCTGAAGGACGATCTTAGCTTTGTTCTTTTTCCATCACAAGTCACACCTGGTTGGCACGTTGTAGCTATAGGACTTCATCAAGGAAGGACTTGTAGCTCTCTGTAGTAAAAACGCACCAAAAACATCCCTGGCTTCTTTAGCACTCCAGGGACCCTGCCTCTGTCTTCCAAGTCCTTAGTCATGTTAAAAATACGTTTAGTAGTACACATTACATATTTATTAAGGAAATTACACACATTGTGGAATTTACTTCAAAATATTCTGGTGAGCTTAGGAGTAGAGATGAACTACTGATCAGATTGGTAACTGAAGTTGAAAGATGGATATGTTATATTCATTACATTAGCTTTTATGGTTTTATATTTCTTTGGGACCTATCCTCGTCCGTCTTTATCACATAAATAATAACCACTTCAATATTTTGATATTATAAAAGTAACGTATGCAGAGGACATAGCACAGACCCATGCAGGTTCTGTGATTGTCACTTCTATCTCTGAGCCGCTATGAGCCCTGATTAGTTGATTCTTAGTTGATTGATTCTGCTGGTATCCTCAAGCCCTCTGGCTTCTACACTTCCCGCAGGGTTCTCTGGGCTCTGAGGAGAAGGGCCTGATCGGGGGAGATCTCCAGTTTGGGCTTTCTTCACCTAATGATTGGTGTGGTCTCTGCATCTGCTCCTGTCAGCTGCTGGCAGAAGCCTCTTGGACAGTTGGGCCAGGCTCTTATCTGGACTTCTGGCAGCCAGTGTGGTCTCTCGAAATGTAGAACTCTATGATATCATTTTGTCTATAGTTAAATTTTGTTGACTATCATGTCGTTTGGACTGATGGTATCATGTTGTATAAATAAACGAGCACACCCAGAAGGTCATGTATCTGGACTAATGACACGCCCTGTGTAGGGATGTTTGCAGCATTTGCTTTACATGGTGTAGGCCAACACAGCTCTCACTTGTAATGTCTTCCCTATGAATCAGTGTTTGTCTCTGATGTCCTGTGACTTTCCGTGCTCTCTCTCCCTCTGTGAAATCATGTGCCATGTATGGTGGCATATCATTTATTTATTTGTTTTATGTGTGTGGGTGTTTTGTATACTAGTGTTTCTGAGCGCCATGTGCCTAGTACCAGAGAAGGCCTGAAAGAGGGTATTGGATTCCTGGGACAGATAGTTATGAGCCTCCAGGTAGGTGCTAGGAATCAAACCCAAGTCCTCCAGAAGAACATCCAGTGCTCCTAATCACTGAGCGTCTGTCCAGCCATGCCAGTTACCGTGACCAGTATTCTCCCGGTGGACACTTGCTAGCAATATTTTAATGCTATGAATCTCCTTGCATAAACATCTGAAATTCTGGAAATTAATTCTGAAGTTCTGTTCCTAGAAGGGAAAATGCTTGATATATATTTTACACAATTAGAATATTTGGTTAAAATTTTAGTAGGTAGATTTTATATATGTGTATATGTATATATGAGTACACACACACACACACACACACACACACACGCACACTTACTTTCTCTTTTCCAAATGGTTCCCTCTGATAATTCTTAGATGTTCATCAGTTTCAGTATTCAGACAAACACAATAGGCCACATCTAGCACCTTCCTTATAAAGGGAAGTCTTCAGTTGTGAAAGACAAGAATAAGCTTTATTAATTTCAAACCTGCATATACAGAAATGTAAACAGCTGTTTGAGGTGGTGCATGCCTGTGATTCCAGCACTCTGGAGACAGACAGGAGAATCTCCAGTTTAAGGCCAGCATGGGCTACATAGTGAGGCTGACTCAAGATGAAGAAAAAAATGAGGAAAAAAATCTACAAGTATAACTGAGTAAATATCAGCACAAGACTGGATCGGGCACCAACATTCCATCATGGACTGGGGAGGGGCTCCTGAGACACCCCCCCCCACCTCTTCCTGAAGAGCTGTAGTCAGTTAACAGTTGCTGGGAGACAGGGAGTCACTTTCCCAGTGTTGTAGCCACTGGTAAGGTGCCCAGCTCAAGTAAAGACCCACTTACTCATGCTCTTTCAAGCAACTCTAAGTTCAGTAGGGCACCAACATCCCCCACACCCGTGAAGCTAGGACAACTGCTTATTGGGAAGAACGTCAGGGCAGTGCAGGGAGGGGATAAGAGAGGATCCGGGCATGAGTGCGCCGTCTACCTGTGTGGTGAGAGGATAAACTCTAAGAATATAGCTAGCTACAGTTCTGATTGGACTGATTTAATCTTTCCATGTTCTTCCTCCGTCTAATTGGTTTCATCTAATGTTGAAACAAAATGTCAGAACCTTGAATATCTTGAGTTGATTTTATAAGCTCATGTGTCAAAGGCAACATTACTGCTATAGAACAAGCACTAGACATTGGCTAGGTCTTTAGAATTGTTAAGACACCTGAGTGTAAAGTTGAACGGTACCTGTTACAGATTGCAGGTAAGTCTCCTATTGTAAATCCAGAGTCAGCATTGGGGCCTGCAGCTGACTGTTAATCTGAGTCCTTACTTTTTGTAGCTCTGTCAGATTTATTTTCTACTTTTACAAGTCCATTTTAGTGCATGATCCTAAGGACAGCCTGGTAGGTCACTTTCAGGAAGTCCAACCATCTCCTATGACAGTTTCTATTGCTCTAAAGGTCCCACCCTGACAAGACTGGCTGGCCAGCAAGCCTGTAGACCATAGCCTTTCCATTGCCAGGATGACAAGCATCTGCCACATCTGGCCTTTTTCCATGGGTCTGGGGAATTAAACCACGTCCTTATGCTTGCAAGGCAGGTGCTGTACCAGCCAAGCCCTCCACCCCCTGCTGTACCAGCTAAGCCCTCCATCTCCACTTCAGTTATTGGCTTCAGGAAGCTCCTTGACCTTTAGTTCTCTGGTGAATCAAGATATTTGGTTCCTTTATTCTTTTAGACTGTAATTGCTTGTGTGCTGGTAAAAAATGGAAAGGGAGTGAGGTGTGTGTGCGTGCATGTGTGTGTCTCTGTGTGTGTGTGTGTGTCTGTGTGTGCATCTGTGTCTGTGTGTGTATGTCTATGTCTGTGTGTCCCGTGTCTGTGTGTGTGTGTGTGTGTCTGTGTGTGTATGTCTGTGTGTTCGTGTCTGTGTGTGTGTGTGTCTGTGTGTCCGTGTCTGTGTGTCCGTGTCTGTGTGTGTGTGTCTCTGTGTGTGTGTGTCTGTGTGTCCGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTCCGTGTCTGTGTCCGTGTCTGTGCGTGTGTGTCTCTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTATGTCTGTGTGTTCGTGTCTGTGTGTGTCTGTGTGTCCGTGTCTGTGTGTCCGTGTCTGTGCGTGTGTGTCTCTGTGTGTGTGTATGTCTGTGTGTCCCCTGTCTGTGCGTGTGTGTCTCTGTGTGTGTGTGTGTCTGTGTGTCCGTGTCTGTGTCTGTGTGTGTCTGTGTGTCCGTGTCTGTGTGTCCGTGTCTGTGCGTGTGTGTCTCTGTGTATGTGTATGTCTGTGTGTCCCTGTCTGTGCGTGTGTGGTGGATGAGACTGAGGTAGGTAGATGGAGTGAGGGATGGGTGGGTGGATGGAAACACTGCTTTAGATAGCCTCACGAGTAAAGTGGGTCACTCTACACGGGCCAGTTAGAACAAACTCTGTCTAAGAGACTTCTGAGGCTCAGAGAAATCTGAGTAGGCACATTAGCTGGTGCTACGATTAAGTAATTAGTTTGTAATTCAACTAAGTCTTGGCTTGATTAGGAGTAGCCAACAGAGTCACATTCATTACAGTATTGGGAGTTAAAATCACTGAGAGAGTTGTAATGCGTCTGTCATATATAATTTTGCAG
Seq C2 exon
AATGGAAGCTTCTTGCCTCGAGCTGGCCTTGGAAGGAGAACGTCTGTGTAAATCAGGGGACTGCCGCGCTGGCGTTTCGTTTTTTGAAGCCGCGGTTCAAGTTGGAACTGAAGACCTGAAAACGCTCAGTGCTATTTACAGCCAGCTGGGCAACGCTTACTTCTACTTACACGACTACGCCAAGGCGCTAGAGTACCACCACCATGACTTAACCCTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=WD(100=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]