MmuINT0081822 @ mm9
Intron Retention
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21204404-21207945:+
Coord C1 exon
chr9:21204404-21204457
Coord A exon
chr9:21204458-21207579
Coord C2 exon
chr9:21207580-21207945
Length
3122 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCTGCTGCTTCCCTGTCTAGGTC
3' ss Score
11.92
Exon sequences
Seq C1 exon
GTGCTGGATATGGAAGCTATGGGTACAGCAGCAATTCGGCCACAGCAGGCTACA
Seq A exon
GTAAGTGCACTTTCTGTGTCTGCACTTGGGAAGCTGCGGCAGCATAGTCTGGGTCTCATTAGGGTAGGGTGCTGGCCTCAGCATCTCTGAGGCTCAAGGCCACCAGCCGTACCTTTTTGCGGTGAATAGGTTAGCTGGCCCTCAAGACCCCCACCTCCCCATCCCCAAAGTGTGTCCTTGACAGTTTTAATGCTAAGACAGCCTTTGAGTACCACTTAAGTTCCTTTGAAGTCGGCATTTTAAATTTCTCTGCTTTAAGCACCAGTCTTTGAGAATGCGCCTTCCTGCCCATGCACCGCTCTTGTCTTGAGAAGGAGCCTTCATTGGGGGGTCACACGAGCAGAGAAATCTAAAACCTGAATTTCAAATGTGGCGCTCTGTGCCCTTTTTCAAAAGAATTCTAATTTCTTCTCTCTGCTCTGTCTCCCCCTTTTGTAGGTGACTTTTTCACAGACTGCTACGGCTATCATGATTTTGGGGCTTCCTAGAGCGTCTAAAAGTATTGACACAAAATCAACTTTTTACTCCAATTTCCTCCAACTCCAAAACCCAAAGTGTCCGTGCTGTGTCCCTGTGCTTCACTGGGGTTCTCAACCGTGGCTTTCCACCGCAGCCTGTCTGAAACTGTTAGCCTGCAGACTTAAGACAATGGCAGTTTCTATCATGAATTTGCCTTTGAGCTTGGTCATTTCGAAGTTCACACTAAGTGGAAAAACCCTTTTCTCAGAGATTTTTTTGTGTGTGTGTGTGTGTGCAGCCTTGCACAGAATTCTAGAGCCAGCGTTGTTCAGCATCAAGGCAAAAGCCCACCTTTGCTTTTTATGGAAAGCATTCTTTTATTTAAAGAGACAGATACTGGCACGTTTAATCTACCTTTGTCTTAATTTACAGCAGGTTTTGTATGCATTTTTAACCTTTTCACAAGTTTCCACTTCTGGTTGATGCCTTTGGCAGTGATGAAACTGTTTCAGCACATGTGAATCCACAATAGCTGACTCTTTCCTTGCCTTTTTACTGAGCATGTAAACCTCCGGGACGGCCAGGACTGTGGACTGCATAGAGCAGGGCCTCCCACCTTTTGTATATGCTCTGGTGGGTCCTTGGGGCGAGGAGGTTCTGTGGCTGTTTTAGTTAAGAAAGTGAACTCGCAAAGGCATCAAAACTGCGCTTCCGTTACTTGTGTGAGAAATGACACAGGCTTGAGAGGAGGAAATAACGGTAAAATTTTGCAAGTCCTGATGGCAGCGTCAGTGACGGACTCCTGGATTGGATTTGGCTATGTTTTCTTTTTCACAATGGGGCTTTAAAAATGAGCTGGAAGAGTCTTGACACCATCACCAGAGGTTTTTCCCAGCTCCCCCTACCCCCACCATGATCTACACTGCCTGGCACACAGACACTGAATCTGTGTGCCTAGAAATTTGTCCCAGTGTGTAATGTACAGAGTCCCTTCCTTTTGGTGGGGAGTCTTGTGATACTGTGGCTAGGCCCCTGCTCTGCAGTCTTTGCTGCAGAACTGCCCCTGCCTTGACTTGCAAGATTTGACGTTTATTCAGGCAAAAAGTGGTCAAAATGGTTACTGTGTGATTTGTTTCCCAAGGTTCGAAAAGTCAGTGAAACTTTCTAAGATTTTGCATGATGTATTTTATTTTATTTTTATTTTTTAGAAAGTTATTGTTGGCAAATAATGTCTTTTTATACCAGGAAATAGTTCTGAATGACGTTGAAGACCTACCCTTCCTTATTACTATTATTTTTTAAATGAATACATGTTAAAGTAATGAGCCCTCCGTACTTGAGTCTTCATTCATGCCTGGCTTCAGGCAGGCAGCTCAGTTGCTCAGCAAAGGACCCTGGGGAAGCTAGGGCAGGGTTTGGAGGAGATACTGGGGTGGGGTTGGGGAGTGGGGAGTGATGGGGCCCTCGGCTTCCCAGTATCCTCACTGAGTCTCCATGTGTTTGCTTTCTTGCATTGTGGAACACTTCCTCCTGCAGTGTTGTGGCTTTGTGATGGGGATGGGAGAGACCTGTCTAGAGGAGGGCCTGCACAGGGGTATTGCCTCTCCTGGTGCTTGTGCTGGTAGCTGGGGGCAGCATCAGCATGGGTGTGAGGTGTGCATCCACAAGGGGGCAAAGGGAAGGGGTGGTGCCCTTAGTTTTCAACCTGGGAAGGAAGGAAGGACAGGCTTTGTGGGAGTATCCCTTTAACCTTCTACCTGTCTAGGGCTTGATGGGTTTCACTGGGCTTAAAAGGTCTGCATGCTGAGACACCTACTCTGGGAATCCAGGCTTATAGGAACTTCAAGGCCCCCGTTGAGCACTGGCTTCCCTTGAGCCTGCCTGGAGATGGGAACTCCCTTCTTCAGTGGGGCTGAAGTGATGCCATGGCCTAGCCCAGCCCATGCCATTCCACCAAAGTCTCCAATAGGGAGCATGTGACAAACCCAGTGATTAGAAGTGAGGGCCAGAGACTGTTGGCCGGCCACAGTGCTAGCTCATCAGTCATGCCACTGAGACCCATCAGACATAGCCTGTGCTTGCCTTCTCATGAGCCTGGGGATGCATTTTGTGCCCACAGTCCTGTGTCTTTCACAGGAAGGGAGGGAGGAAGCTTGGCAAGTGTCTGAGTCTCAAATCACTGTCTTGAGAGCGCTTGGTCTTTGAAGAAGCATGGTGGTTATGGCAGAGCAACTCCTCCTGGGGTCTCCAAGGCTTATGCCTGTTAAGTTCCTTTCCTGCACGGAGGGGAAAGGGGGTGGCTCACTGCTTCTGGGTGCTTTGCTTTTCCTGTCACCGTTGGGGACATCTGGGTAGCCGTCAGCTAGTCCTGAATGTCATCCACGCTCGGAGCCCATCTCATTGTAATGTTGACATCTGCAAAGCTGCTGTCGTGCTGCTGCTTGGCAAAGACCCCCTTGTCATCAGCTGAGGGTGAGTGGAGCTGAAGGCTGGGCTGGCTTAAGCCAGGCTGCCTCGACCAGCAGAGCCTTGTGCTCCAATCTTTTTCTCGCTGCTCTGAGCAGTCGGCTGCGGGCCAGCCTTCAGGGCCCATGACTGCTCCTTCCTCCCCTCCCAGCCCTCACCCTGGGACCATCCATCTAATCTGCTGCTTCCCTGTCTAG
Seq C2 exon
GTCAGTTCTACAGCAATGGAGGGCATTCTGGGAATGCCGGTGGTGGAGGCAGCGGGGGAGGTGGTGGCTCATCCAGCTACAGCTCCTACTACCAAGGAGACAGCTACAACTCACCAGTACCCCCGAAGCATGCTGGGAAGAAGCCGCTGCATGGGGGCCAGCAGAAAGCCTCCTACAGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAACCTTACAACCAGAGCCAGTACAGCAGCTACGGCACGCCACAGGGCAAGCAGAAAGGCTATGGCCATGGGCAGGGCAGCTACTCCTCCTACTCCAACTCTTACAACTCCCCAGGTGGTGGTGGGGGCTCTGACTACAGCTACGACAGCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178-Ilf3:NM_010561:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: