BtaINT0076044 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16385654-16389401:+
Coord C1 exon
chr7:16385654-16385707
Coord A exon
chr7:16385708-16389035
Coord C2 exon
chr7:16389036-16389401
Length
3328 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCTGCTGCCTTCCTGTTTAGGTC
3' ss Score
12.31
Exon sequences
Seq C1 exon
GCGCCGGGTATGGCAGCTACGGGTATGGAGGCAACTCAGCGACTGCCGGCTACA
Seq A exon
GTAAGTGCGTGTTTCTCTTTGTCTGAGCTTGGGAAGAAACTGCAGTTTAGCTCCCGTGGCCTGAGTTAGAGCAGGGTGGCCCAGCAGTATTAGCAGCAACAGCCTCCCTGAGATTCATGGGCGGCTGGCACCTGTGCTTGGTGTTAGGGCAAGTGGTCCTCCAGCGCCCCCATGCTGCAGAAGCATAATTTACTCTCTAAGTGTTAAGGCTCACATTGTATAACTAACTGGCAAATTCGTTAAAAATCAAAATTTTAAATTTCTCTGCTTTAAGCCATGCGAAGCACCAAACCTGTGAATACGCTTTTCCTGACAGTGCACAGCTCTTGTCTTGAGAAGGAGCCTTCATTGGGGGGTTACAGGAGCAGAGAAATCTAAAACATGAATTTCAAATGTGGCGCTCTGTGCCCTTTTTCAAAAGAATTCTAATTTTTTTTCTCTGCTCTGTCTCCCCCTTTTGTAGGTGACTTTTTCACAGACTGCTACGGCTATCATGATTTTGGGTCTTCCTAGAGCATCTAAAAGTATTGCACACAAAATCAACTTTTTACTCCAATTTTCTCGAACTCCAAAACCCAAAGTGTCCGTGCTGTGCCCTGTGCTTCACTGGGTTTCTCAACCGTGGCTTGTCACCGCAGCTTGTCTGAAACTCTTAGCCTGCAGAATTTAAGACAATGGCAGTTTTTATCGTGATTTGCCTTTGAACTTGGTCCTATTGAAGTTCACAATAAGTGGAAAACAATTTTTCAGAGAATGCGTTTTTGTGCAGAACTGCACAGAATTCTAGAGCCAGCGTTGGTCAGCATCAAGGCAAAAGCCCACCTTTGCTTTTTATGGAAAGCATTACTTTATTTAAGAGACAGATAATAATGCATTTTAATCTACCTTTGTCTTAATTTACAGCAGGTTTTGTATGAATTTTTAACCTTTTAACAAATCCCCAAATCTCTTTGATGCCTTTGACAGTAACAGTTTCACCACATCCGAATCCAGAGCAATCTGCCTTTTTTTCCATAAGCATGTGAAACATTGGGAACGTTGGGGAATTGTACATTGTGCTAAGTTAACCTCTTCCATCTTTTGTAACTGCTCTGGTGGGTTCTTGTTCCGGAGTGCGATATTCTGTGGCTGCTTTAGCTAGAGGTGAACTCTCAAAGGTATCAAAACTGTGCTTCCACTCTTAGTGCAAGAAACAGACAGGCTTTAAGGAAATGAGAACGTAGAATTTTGCAAGTCCTACTCATCACTGCAAATGCATGGGATTCTTAAGGATTTTTCTTTTTTCCTTTTTCTTTTAAATGGGGCTTTAAAAATATCCAAGTAGAAAGAGCCTAATACATAGCGCCTAATTCTCCAGTGAGGAGCCAAGCCCCCCAGCAGGCCCTGTGCTGCCAGCCTGCTCCCACGACAGGTTCCAAAAGGCCTGGAAAGCTACTGCCCTCTCTCCGGAAGTTGCAGGCTTGAGCTGGGGCTTCTCCCTGCATGTAGAGGTGCACCAAGGCGTTCTGGCTCTTGAATGAGACCCTCGTTTCCTGGCGGGAGCCCTTCTTGGGAACGAGTGTGGTTTTGGCTCTGATCAACAATTCTTGCAGCAAAGCCTGCCTCCACATTGACTTGCAAGATTTTGCGTTTATTCAGGAAAAAAACTGGTCAAAACGGTTATTCCATAGTTTGTTCCCAGGGGTTTGAAACATTCAGTGAAACTTTTGAAAACTTTGATTGCATGATGTATTTTTTTTTTAAGAACGTTATTGTTTGAGAATAATGTCTTTTTATACCAGGAAATAGTTATCCTGAAATGACGTTGAAAACTTTCCCTCCCCTTTATTATTTTTTTTTTAATCAATACATGTTAAAGTAACAAGCCCTCAGTCCTTGGCGTCTTCATTCATCCCCACGCTGGCGGAGGGGCGAGGAGGCGCTCAGTGCAGGCCGTGGGCAGCTGAAGTGGTGGGCTGCAGAGAGGAGGGGGGAGTCTCAAGGGGGTACCGCCCCTCCTCCAGGAACCAAAGCATGTTTTCTCTCGCACTGGGGACACAGCCTTCTCCCTGGTGTTTCTGCCTTCTGGTGGGCTGAGTGGAGGGGTCTCGAGGAAATTAACTTATGTGGCAAATTAGCTCTATCCAAATTATTGTCCAAACCACCCAAGACACAGTGGTATGAGACATATATCTGCAGTGGGTGGAAGGTCCTTGAGAACTCCCAGATTCACCTCATTCAAAAGACTGGAGACTTGCTGCTAAATATAGGAAGGAAGGACTGGGTGTGTGGGGGCATTCCCTTCTCCTCCTCCCCCATCCCGGGCACACACAATGGCTGGCTGTGTCAGGGGCAGCAGCCATCCAGAGGTAGTGTGCCCAGGTCTGCCTGCCCCAGGGACTCTGCTGCCCTTGCGTGAACGTCGGGGATTGCCTGGCTGGGTCAGAGAGCCACCCACATGACCTGACCTCCGCCTTCCATCACCTTGCCTTATCAGGCCCATCCCCCATGGATCCATCTGAGTGTTGGGGACTGTTAACAAACCAGGGTCTATACTTAGCGACCAACGTTGGGGAGGCGGGTATCCATTGTGACATTTTCTGCTTCAGGGCCTGAGAATGTGGTGGCCTCGCTGCACACTTGTTAGTCCTGCCACTGGGTCCCGCCTGTGCCTGGCAGCTGTGCTGGGAATGAGGGGGGTGCCCTGTGGGAGGCCTCACCTGGGCGTTGGGAACCGAACTCTGGTGTTTGATTTCCCCATGAGGCTGTGGAAGTCACACCCGGGAGACATCCCAGGTCATTGGTTAGACCAGCTAGTCTTCCATGAATGGCTCTGGCTTTAGGGGCGTCATTACAGAATATCTCCTGAGGTCACAGGGCTTGGACTGCCGAGCCTCTTCCCAGCACAGCGGGGAGTTGGGGGGGCGAGGGGAGGAGGACAGGGTCGGAGCTGGCTGCTTCTGTGGGGCTTTGCTTTTCCTGTCACTGTTGGGGACATTTGGGTAGCAGCAAGCTAGTCGTGAATGTCATCCCGCGCTTGGAGCCCATCTCACTATAATGTTGACATCTGCTGCAAAAGCTGCTGTCGGCCTGCTGTCGTGCCGCTGCTTGGCAAAGATCCATTGTTGTCGTCAGCTGATGGGTGAGTGGAGCTGAAGGCTGGGGCCAGCCCCAGCCAGGCTGCCTGATGGACCGGAGCCACCACTCCTCACTGTCCTGCCTCCGTCCCTCTGTCCCGGCCTGGGCCATGGGCTTGTGGGTCAGCCTTCAGGGCCCACAGCTGCAACCACCCCCTCCTGCCCTTCCCCATTTCCCCCTCCTCCGCCTGACCTGCTGCCTTCCTGTTTAG
Seq C2 exon
GTCAGTTCTACAGCAACGGAGGGCATTCGGGGAATGCCGGTGGTGGCGGCGGCGGGGGCGGTGGTGGCTCTTCTGGCTACGGTTCCTACTACCAAGGTGACAACTACAACTCCCCAGTGCCCCCAAAACACGCCGGGAAGAAGCAGCCGCACGGGGGCCAACAGAAGCCCTCATATGGCTCAGGCTACCAGCCCCACCAAGGCCAGCAACAGTCCTACAGCCAGAGCCAGTACAGCAACTACGGACCCCCACAGGGCAAGCAGAAAGGCTACAATCACGGACAAGGCAACTACTCCTCGTACTCCAATTCCTACGGCTCCCCTGGAGGTGGAGGCGGATCCGACTACAGCTACGAGAGCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076:ENSBTAT00000018818:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]