HsaINT0080500 @ hg19
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]
Coordinates
chr19:10794593-10798384:+
Coord C1 exon
chr19:10794593-10794646
Coord A exon
chr19:10794647-10798021
Coord C2 exon
chr19:10798022-10798384
Length
3375 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCCACTGCCTCCCTGTTTAGGTC
3' ss Score
12.12
Exon sequences
Seq C1 exon
GTGCTGGGTATGGAAGCTATGGGTACGGAGGCAACTCGGCGACAGCAGGCTACA
Seq A exon
GTAAGTGTGCGTTTCTGTCTGTCTGACCTGGGAAGCAGCTGCAGTGTAGCGTCTGGGCCTGAGTTAGCAAAGGGTGGCCAGAGCAGCCTCGAGGAGGCTGTAGAAGGGGCACACACCTTTTTGCGGTGATTAGGTCAGACGGCCCTCGACCCCCACCCCTTCCCGGCCCCACAGTGGGATTGATTGTGTTAATACACGAACTCGTGTAACTGCAAAGTTCCTTAAAAGTTAGAATTTTAAATTTCTCTGCTTTAAGCCATGCGAAGCACCAATCTTGTGAATACGCTTTTCCGGCCAGTGCACAGCTCTTGTCTTGAGAAGGAGCCTTCATTGGGGGGTTACAGGAGCAGAGAAATCTAAAACATGAATTTCAAATGTGGCGCTCTGTGCCCTTTTTCAAAAGAATTCTAATTTCTTCTCTCTGCTCTGTCTCCCCCTTTTGTAGGTGACTTTTTCACAGACTGCTACGGCTATCATGATTTTGGGTCTTCCTAGAGCGTCTAAAAGTATTGCACACAAAATCAACTTTTTACTCCAATTTCCTCCAACTCCAAAACCCAAAGTGTCCGTGCTGTGTCCCTGTGCTTCACTGGGTTTCTCAACCGTGGCTTTTCACCGCAGCTTGTCTGAAACTCTTAGCCTGCAGAATTTAAGACAATGGCAGTTTTTATCGTGATTTGCCTTTGAACTTGGTCCTATTGAAGTTCACAATAAGTGGAAAACAATTTTTTCAGAGAATGTATTTTTGTGCAGAATTGCACAGAATTCTAGAGACAGCGTTGTTCGGCATCAAGGCAAAAGCCCACCTTTGCTTTTTATGGAAAGCATTACTTTATTTAAAGAGACAGACAATGACGCATTTTAATCTACCTTTGTCTTAATTTACAGCAGGTTTTGTATGAATTTTTAACCTTTTAACAAACTCCCAAATCTGGTTGATGCCTTTGACAGTGATGAAAACGATTTCACCACATCTGAATCCAGAGAAACCGGCTTTTTTTCTTATTGCGAGCATGTTAAAACGTTGGGAACATGTGGGGAATTGTATATTGCGCTGAATTAACTTCTCCCGCCTCTTGTAATGCTCTGGTGGGTTCTTGTTTGGGAATGCGATATTTTGTGGCTGGTTTAGCTAGAGAGTGAACTCTCAAAGGTATCAAAACTGTGCTTCCATTATTAGTGCAAGAAACAGACAGGCTTTAAGGGGTAGATGACGTGAAATTTTGCAAGTCTTAATTACAGCTGCAGATGCATGGGATTCTGGATTTTTTTGTTGCTTTTTAGTTTAATGGGACTTTAAAAGTAATTGAGGAGAAAGAACCGTGATGTTCCCTGTTTCTCCAGTAAAGGACTGGCTTTTGCTTGGGCAGAGGTGGTGCTGCTGGGTGTGCAGCTGCCACAGACTCCAAAGGCGTAGAAGTTTGTGCCAACACACGGAGTCATTCTGGCTCTCTGCTGAGGCCCCTGTTTTCTGGCAGGTGCCCTCCTTGGAAACTGGTTTTGGCTCTGATCAGCGGTTCTTTTTGCAGCAAAGCCTGCATCTGTGTTGACTTGCAAGATTTTGCGTTTATTCAGGCAAAAACTGGTCAAAATGGTTACTACATGATTTGTTCCCAGAGGTTTGAAACATTCAGTGAAACTTTTTAAAACTTTGATTGCATGATGTATTTTTTTTTTAGAAAGTTATTGTTTGAGAATAATGTCTTTTTATACCAGGAAAATAGTTATCCTGAATGACGTTGAAAACTCCCCCTCCCCTTTATTTTTTTTTAATCAATACATGTGAAAGTAACAAGCCCTCGGCCCTTGCGTCTTCATTCATTCCCGGCTTCAGGCGGGGCGAGGTGGTGTGCTCAGTGCAGGACACTGGGGAAGCTGGGGCTGTGGGGCTGTGGGGTGTGGGTCCTGGTGGGGGGGTTCTGAAGATCCCATCCTCCCAGTCTCCTCGCTGAGCTGCCGCATGTTCGCTTTCTGGCATTGTGGGACACATCCTCCCCCTTGGTGTCTTGGCTTTGTGATGGCGGGCGAGGGAGGAGGCCTGCCTGAAGAACACAAACTGAAGGTTGCAGATAGTTCTGTCCACGTTGTCATGCAGGCAGCCCACCACACCAGCGTGGGGTACACATCTCCAGTGGGTGGAGGCACGTGAGGACTCCCAGTTACCCTACCCAGGAGGCGGTGGGCCCTTAGTGTCCTCAATCTGGGAAGGAAGGACAGGCAGCGTGGGAGCCTCCCCTTCCCTCCCACCCACCCTGGGCCTGGAGGTCTGGGCAGCCTGACTGGGCAAAGGTGGCTGCATTCACAAGCCGACCCGCTCTGAGAGCCCAGGAACTCAGCTGCGCCTGGTGAGCGCTTGGGCGTTGGCCAGCTTGGCTGGAGAGCCACCACCATGACCCAGCCTCCCACCTCACCCACCCTCTGAGCCTTCCCACACCCACTGTGGAGGCTCCCTGTGTGGGGCTCCCTTGCAAGGCTTGGGGTGCAGCATTCCCTCAGCCAGTGCCGTCCCCTTTGTTCCACTCGAGCCTCTGGCGGGGCCGTGTATTGACAAACCTAGTGACCAGAAGTGGGGTCTCACTGCTACATTTTCAGCTTGCGGCTGAGAATGTAGTGGCTGCACTGCACACTTTCAGCCCTGCTGCTCAGCCCCACCTGCACCCAGCAGCTGTGCTGGGGACAAGGAAGGGGCCTCGGGAGTCATTAGGGCTGTAGGTCTAGGCCTCACCCGGCTTTCCTGCCCCAGCCGTGGCCACTGCCCTCTGCCAGCCAGGCTGGGGCTTGGTCACATCCTGAGTCACATGCTTGCATGAGTATCGCAAGGGAGGTGCCTGCATCATTGACTGAGTCTCGATTTGTCTTCCAAGAACCAAACCAGCTCAGACCAGTTGGTCTTCTCAGGATGATGACGGTCCGGGGCCTCTTTAAATAGCATCTTTTAGGGGCCTCCAGGCCTGTGCCTGTGGAGCCTGTTCCCAGCACAGCAGGGAGGAGGGGGGTGGCTGCTGCTTCTCTGGGGCTTTGCTTTTCCTGTCACCATTGGGGATCTCTGGGTAGCCGTCAGCTAGCTGTGAATGTCGTCCCGCGCTCGGAGTCCATCTCATTGTAATGTTGACATCCGCTGCAAAAGCTGCTGGCGCGTGCTGCTTGGCAAAGCCCCATTGTTGTCATCAGCTGCTGGGTGAGTGGAGCTGAAGGCTGGGCCAGCCCAAACGGCTGTGCTAAGGACCGGAGCCACTGCTCCTCTCCCTCCTTGTCCTACTGCCTCTGACCCGGGCTTGTGGGTCAGCCTTCAGGACCCATGGCTGCCGCCTGCCCTTCCCTCCCTTCCCCCTGCCCTTTCCCGTCCTCCGCCTGACCCACTGCCTCCCTGTTTAG
Seq C2 exon
GTCAGTTCTACAGCAACGGAGGGCATTCTGGGAATGCCAGTGGCGGTGGCGGCGGGGGCGGTGGTGGCTCCTCCGGCTATGGCTCCTACTACCAAGGTGACAACTACAACTCACCGGTGCCCCCAAAACACGCTGGGAAGAAGCAGCCGCACGGGGGCCAGCAGAAGCCCTCCTACGGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAGTCCTACAACCAGAGCCCCTACAGCAACTATGGCCCTCCACAGGGCAAGCAGAAAGGCTATAACCATGGACAAGGCAGCTACTCCTACTCGAACTCCTACAACTCTCCCGGGGGCGGGGGCGGATCCGACTACAACTACGAGAGCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-ILF3:NM_017620:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)