HsaINT0080500 @ hg38
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10683917-10685765:+
Coord C1 exon
chr19:10683917-10683970
Coord A exon
chr19:10683971-10684415
Coord C2 exon
chr19:10684416-10685765
Length
445 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCTGTCTCCCCCTTTTGTAGGTG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GTGCTGGGTATGGAAGCTATGGGTACGGAGGCAACTCGGCGACAGCAGGCTACA
Seq A exon
GTAAGTGTGCGTTTCTGTCTGTCTGACCTGGGAAGCAGCTGCAGTGTAGCGTCTGGGCCTGAGTTAGCAAAGGGTGGCCAGAGCAGCCTCGAGGAGGCTGTAGAAGGGGCACACACCTTTTTGCGGTGATTAGGTCAGACGGCCCTCGACCCCCACCCCTTCCCGGCCCCACAGTGGGATTGATTGTGTTAATACACGAACTCGTGTAACTGCAAAGTTCCTTAAAAGTTAGAATTTTAAATTTCTCTGCTTTAAGCCATGCGAAGCACCAATCTTGTGAATACGCTTTTCCGGCCAGTGCACAGCTCTTGTCTTGAGAAGGAGCCTTCATTGGGGGGTTACAGGAGCAGAGAAATCTAAAACATGAATTTCAAATGTGGCGCTCTGTGCCCTTTTTCAAAAGAATTCTAATTTCTTCTCTCTGCTCTGTCTCCCCCTTTTGTAG
Seq C2 exon
GTGACTTTTTCACAGACTGCTACGGCTATCATGATTTTGGGTCTTCCTAGAGCGTCTAAAAGTATTGCACACAAAATCAACTTTTTACTCCAATTTCCTCCAACTCCAAAACCCAAAGTGTCCGTGCTGTGTCCCTGTGCTTCACTGGGTTTCTCAACCGTGGCTTTTCACCGCAGCTTGTCTGAAACTCTTAGCCTGCAGAATTTAAGACAATGGCAGTTTTTATCGTGATTTGCCTTTGAACTTGGTCCTATTGAAGTTCACAATAAGTGGAAAACAATTTTTTCAGAGAATGTATTTTTGTGCAGAATTGCACAGAATTCTAGAGACAGCGTTGTTCGGCATCAAGGCAAAAGCCCACCTTTGCTTTTTATGGAAAGCATTACTTTATTTAAAGAGACAGACAATGACGCATTTTAATCTACCTTTGTCTTAATTTACAGCAGGTTTTGTATGAATTTTTAACCTTTTAACAAACTCCCAAATCTGGTTGATGCCTTTGACAGTGATGAAAACGATTTCACCACATCTGAATCCAGAGAAACCGGCTTTTTTTCTTATTGCGAGCATGTTAAAACGTTGGGAACATGTGGGGAATTGTATATTGCGCTGAATTAACTTCTCCCGCCTCTTGTAATGCTCTGGTGGGTTCTTGTTTGGGAATGCGATATTTTGTGGCTGGTTTAGCTAGAGAGTGAACTCTCAAAGGTATCAAAACTGTGCTTCCATTATTAGTGCAAGAAACAGACAGGCTTTAAGGGGTAGATGACGTGAAATTTTGCAAGTCTTAATTACAGCTGCAGATGCATGGGATTCTGGATTTTTTTGTTGCTTTTTAGTTTAATGGGACTTTAAAAGTAATTGAGGAGAAAGAACCGTGATGTTCCCTGTTTCTCCAGTAAAGGACTGGCTTTTGCTTGGGCAGAGGTGGTGCTGCTGGGTGTGCAGCTGCCACAGACTCCAAAGGCGTAGAAGTTTGTGCCAACACACGGAGTCATTCTGGCTCTCTGCTGAGGCCCCTGTTTTCTGGCAGGTGCCCTCCTTGGAAACTGGTTTTGGCTCTGATCAGCGGTTCTTTTTGCAGCAAAGCCTGCATCTGTGTTGACTTGCAAGATTTTGCGTTTATTCAGGCAAAAACTGGTCAAAATGGTTACTACATGATTTGTTCCCAGAGGTTTGAAACATTCAGTGAAACTTTTTAAAACTTTGATTGCATGATGTATTTTTTTTTTAGAAAGTTATTGTTTGAGAATAATGTCTTTTTATACCAGGAAAATAGTTATCCTGAATGACGTTGAAAACTCCCCCTCCCCTTTATTTTTTTTTAATCAATACATGTGAAAGTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351:ENST00000407004:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCTATGGGTACGGAGG
R:
TCTGCACAAAAATACATTCTCTGAA
Band lengths:
353-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development