RnoINT0074295 @ rn6
Intron Retention
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22435560-22439107:+
Coord C1 exon
chr8:22435560-22435613
Coord A exon
chr8:22435614-22438741
Coord C2 exon
chr8:22438742-22439107
Length
3128 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCGCTGCTTCCCTGTCTAGGTC
3' ss Score
11.86
Exon sequences
Seq C1 exon
GCGCTGGATATGGAAGCTATGGGTACAGCAGCAATTCGGCCACAGCAGGCTACA
Seq A exon
GTAAGTGTGCACTTTCTGTGTCTGCTCTTGGGAAGCTGCGGCAGCATAGTCTGGGTCTGACTAGGGTAGGGTGCTGGCCTCAGCATCTCTGAGGTTCAGGGCCACCAGCCGTACCTTTTTGCGGTTGATTAGGTTAGCTGGCCCTCAAGCCCCCACCTCCCCATCCCCAAAGTGTGTCCTTGACAATTTTAATGCTAAGACACCCCTTGTGTACCACTTAAGTTCCTTTGAAGTCGGCATTTTAAATTTCTCTGCTTTAAGCACCAGTCTTTGAGAATGCGCCTTCCTGCCCGTGCACCGCTCTTGTCTTGAGAAGGAGCCTTCATTGGGGGGTCACACGAGCAGAGAAATCTAAAACCTGAATTTCAAATGTGGCGCTCTGTGCCCTTTTTCAAAAGAATTCTAATTTCTTCTCTCTGCTCTGTCTCCCCCTTTTGTAGGTGACTTTTTCACAGACTGCTACGGCTATCATGATTTTGGGGCTTCCTAGAGCGTCTAAAAGTATTGACACAAAATCAACTTTTTACTCCAATTTCCTCCAACTCCAAAACCCAAAGTGTCCGTGCTGTGTCCCTGTGCTTCACTGGGGTTCTCAACCGTGGCTTTCCACCGCAGCCTGTCTGAAACTGTTAGCCTGCAGACTTAAGACAATGGCAGTTTCTATCATGAGTTTGCCTTTGAACTTGGTCATTTCGAAGTTCACACTAAGTGGAAAAACCCTTTTCTCAGAGAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCTTGCACAGAATTCTAGAGCCAGCGTTGTTCAGCATCAAGGCAAAAGCCCATCATTGCTTTTTATGGAAAGCATTCTTTTATTTAAAGAAACAGATAATGGCACGTTTTAATCTACCTTTGTCTTAATTTACAGCAGGTTTTGTATGCAATTTTTAACCTTTTCACAAGTTTTCACATCTGGTTGATGCCTTTGGCAGTGATGAAAACTTTCAGCACATCTGAATCCACAGCAGCTGACTTTTTTCCTTGCCTTTTGAATGAGCATGTAAACCTCTGGGATGGCCAGAACTTGTGTACTGCGTAGAGCAGGGCCTCCCACCTTTTGTAAATGCTCTGGTGGGTCCTTGGGGTGAGGAGGTTCTGTGGCTGCTTTAGTTAAGAGAGTGAACTTGCAAAGGCATCAAAACTGCGCTTCCGTTACTTGTGTGAGAAATGAGACAGGCTTGAGAGGAGGGAATAACGTAAAATTTTGCAAGTCCTGATTGCAGCGTGGACTCCTGGATTGGGTTTGGCTTTGTTTTCTTTTTCACAATGGGGCTTTAAAACTGAGCTGGAGGAGCCTGACACATCCCACCCTTTTTTTCCCCCAGCAAATTGCTGACTTTGGCCCGACCAGGGTCTATACTGCCTGGCACACAGACACTGAATCTGTGTGCCTAGAATTTGTCCCAGTGTGTAAAGTGGTGGGGAGCCTTGTGATATTGTGGTTAGGCCTCTGCTTTGTAGTTTTTGCTGCAGATTTGCCCCTGCCTTGACTTGCAAGATTTGACGTTTATTCAGGCAAAAAGTGGTCAAAATGGTTACTGTGTGATTTGTTCCCCAAGGTTTAAAAAGTCAGTGAAACTTTCTAAGATTTTGCATGATGTATTTTATTTTATTTTTATTTTTTAGAAAGTTCTTGTTGGCAAATAATGTCTTTTTATACCAGGAAATAGTTCTGAATGACGTTGAAGACCTTCCCTTCCTTATTACTATTATTTTTTAAATGAATACATGTTAAAGTAATGAGCCCTCCGCACTCGAGTCTTCATTCATGCCTGGCTTCAGGCAGGCAGCTCAGTTGCTCAGCATAGGACCCTGGGGAAGCCAGGACAGGGGCTTGGAGGAGGTGCTGGGTGGGGTTGGGGATAGTTATGGAGCCCTTCCTTGGCTTCCCAGTATCCTCACTGAACCTCCATGTGTTTGCTTTCTTGCATTGTGGAACACTTCCCCCTGCAGTGTTGTGGCTTTGTGATGGGGCGGGAGAAGACCTGTCTAGAGAAGGGCTTGCACAGGGGTATTGCCTCTCCTGGTGCTTGTGCTGGTAGCTGGGGGAGCATCAGCATGGGGCAAGGTCTGCATCCCCGAGCGGGTGAAGGGAAGGTGTGGTACCCTTAGTTTCCAACCTGGGAAGGAAGGACAGGCTTTGTGGGAGTATCCCTTTTCCCTTCTACCTGTCTTGGGTTTGATGGGGTTCACTGGGCTAAAGGTCTGCATGTTAAGGCACCTACTCTGGGAATCCAGGTTTCTAGGAACTCCAAGGCCCCTGTTGAGTACTGGCTTCCCTTGAGCCTGCCTGGAGATGGGAGCTCCCTTCTTCAGTGGGGCTGAAGTGATGCCTTGGCCCAGCTCAGCCCATGTCACTCCACCCGTCTCTAATAGGGAGTATGTTGACAAACCCAGTGATCAGAAAAGCAGGAGCCAGAGACTGTATTGGCTGGCCACAGTGCTAGCTCATCAGTCCTGCCACTGAGGCCCACCAGACATTTTATTATAGCCTGTGCTTGCCTTCTCATGAGGCTAGGGACCCATTCTGTGGCCTGAGACCTGTGTTTTTCACAGGAAGAAAGGAAGCTTGGCAAGTGTCTGAGTCTCAAATCACTGTCTTAAGAGCACTTGGTCTTTGAAGAACCGTGGTGGCTATGGCGAGGCATCTCCTCCTAGGGTCCCCAAGACTTAGGCCTGTTGAGTTCATTTCCTGCACGGAGGGAAAAGGGGGTGGCTCACTGCTTCTGGGTGCTTTGCTTTTCCTGTCACCGTTGGGGACATCTGGGTAGCCGTCAGCTAGTCCTGAATGTCATCCACGCTCGGAGCCCATCTCATTGTAATGTTGACATCTGCAAAGCTGCTGTCGTGCTGCTGCTTGGCAAAGACCCCTTGTCATCAGCTGAGGGTGAGTGGAGCTGAAGGCTGGGCTGGCTTAAGCCAGGCTGCCTCGACCAGCAGAGCCTTGTGCTCCAATCTGTTCCTCGCTGCTCTGAGCAGTAGGCTGCGGGCCAGCCTTCAGGGCCCATGACTGCTGCCTTCCTCCCCTCCCAGCCCTCACCCTGGGACCATCCATCTAATCCGCTGCTTCCCTGTCTAG
Seq C2 exon
GTCAGTTCTACAGCAATGGAGGGCATTCTGGGAATGCCGGTGGTGGAGGCAGCGGGGGAGGTGGTGGCTCGTCCAGCTACAGCTCCTACTACCAAGGAGACAGCTACAACTCACCAGTGCCCCCGAAACATGCTGGGAAGAAGCCGCTGCATGGGGGCCAGCAGAAACCCTCCTACAGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAACCTTACAACCAGAGCCAGTACAGCAGCTACGGCACGCCACAGGGCAAGCAGAAAGGCTATGGCCATGGGCAGGGCAGCTACTCCTCCTACTCCAACTCTTACAACTCCCCTGGTGGTGGTGGGGGCTCTGACTACAGCTACGACAGCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741:ENSRNOT00000009354:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]