MmuINT0085597 @ mm9
Intron Retention
Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95513418-95521865:+
Coord C1 exon
chr16:95513418-95513515
Coord A exon
chr16:95513516-95517197
Coord C2 exon
chr16:95517198-95521865
Length
3682 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
TTCTTTTGTTATTTCTTTAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
GCCATAGCAGAGCCCCATGGTAGCCAGGTGGGAGAAGGGGAGCGAGGACGCGCCACTTACCCTGCAGAAGATTCCTGACCTACAGAGTGAGTGACCAG
Seq A exon
GTAGTAAAGGGCTTGGAGGGCAGAGGGCTATAGACTGGGGGCAGGGGTTGGAGGATAGAGGAGATGGCTGCCCTGCAACCTTCCCTTAGCTCTTGTTTCCCCCTCAGAGAGATCCTGAGCCATGCACTTGCAGGAGGCCACAAGTCCCAAGCCCTGATTGCTTGGATCCCAAAGCCAGGTGCTCAGGCTTGCAGCCAGAGCTTACCAGAAACAGGAAGGCACACGGTTCACCCCAAGCCAGTTCAACCCCCCCCCCCCCCCAGCAAGAATGAGGGAGAGACAGAGGGAGAAACAGAAGCCCCAGGAACAAGGCCACAGTCCCCAGAATCTGGAAAGCGCTGTACAGAAGGAAGCACCTCTTCGGTGTGCAGGACACTCACGTTTCACTTGTCCTGGAAAAACTTAAGCCCTTGTTTTGGATTCAGTGGGCTGAGTGGCATGCCTGTTCCCCAGAGCTCTCCTTCCTCTGTCTTTCTCCTTAAGCACAGCCGGTCGCTTGCACACTTGCAGGTAAGCTGTGCTTGCCTGTGGCAGAGCTCCTGCCACAGCCTGCCTCTGCATTCAGCATGGTAGGCCCTTTCCAAGCCTCAGCAGGGTTACTTTCTCCCTCATTATAAACTAAAGAGTATGGTCTGGGGCACAAGAAGGAACTTCCAAGCTTCCTGCAATGTCCCTGGCTCTAAGGAATAGATCCTAGGAAGTGTAAAGTAGGCTTCAAGAAGTTGAAGCTCTAAGTAACTTACACTCTTCCTTTCAATGAAAACAAAACATGTCTTTTCAAGAAAAAAAAATTTCAAAAAGACCATTTCAAGGGGTGTTCACAATGAAACAGGAAGATTTAATGGCCTGTGGCACCATTTTACATCCTGAGCAGGTGCTGGCCTTCAATGGGGACTCTTGTTTCCATGAAGAGATTTGCCTGCATTCATTCTAAAATGAATTTTATTGCCAAAATGCCCCTCTACCAGAACGATTAGTGCCTGAATCATAAGATAATGCATACCCATTTATTGCTTTTCAAAGGGGAGATTCCCCCCCCCCCGATTCTTAGAATGCCAATGAGGTAGGGGAAAACCATGCCAGTCAGGTAGAGTTCCCCTGTAATCGCCAACGTTATCTTTTCCGAGGAATGTCGGAGTCATCAGTTTCCGTCAGCAGGCAGGTGCTATAAGATGCTCTGGGGCCTTGAGGCCAGCTCTTCCCTGGCTGCTGGCTGCCGAGGCAGGGCAAAGTGCTCCCTGGGGCTGAGCGGGGAGCCTAGAGCTACTTCTCGGTAGGTTTGTTTCTTTTCTGCGACTGCGTTAGATTTCTCCACTACATATCCTTTTGCTTGTTCTTAAAATAGACTCTCCAGCTGGCTCTATTTTGATCTAAAGAATGGAGCAGAATTGTGTGTGTACCTAAATATCACACCTAAAGTGACATTGGTAGCGCTTGTCTAAGAATAACCTGCACAGCACTGGGGATGTTCAGGAAGTTTAATTACTTGCTACTGGAAGGGCTTTAGTTGCTTGATAATTGGGCTTTTCCTAAATGTCATCAGAAACAGGAGAAACCATAATGCTAAGTTATTCACTTGGACGAGGGTGGCATAAATGAACTTGCTCCAACATATGCAAGTTAAAAGGGAGGTCTAAATATGTATCGATACTGCTTTGTCTCTGAAAACTTGGGATAATATTGCTACACCCAAACTATTTTATGAGTAGTCAATCTGACATTTATAATTTCATATGTAAGATAAGTTCTGGATCTGGCCAAGCAAGCTTTAAATAAATATTATCATGATAAATCATTGAAGCTGACTGTACATAAATGCTGGTAACACTTTTGTAAGATATTTGCATAACTTCTGGTATCATCAAGAGAAAAAAATAACTTATTATGTTTTTAGAATAAGGCTTTGTGAAGGCGCTAATTTAATCATGACTGTCATAGTTCTGCTTTACCTAATCATAAGTACAGAATTACCCAGAAAGGGGCAATCTCAATTGAGGAACTGCCTCCACCAGACTGACCTGTAGGCAGGTCTATGGGGCATTTTATTGACTGGTGATTTATGTTGGAGGTACCAGCCCACTGTGGGCAGCACCATCCTCTAGCAGGTAGGTCTGAGCTGTATAAGAAAGGTAGCTGAGCAAGACCGAGGAAGCAAGCCAATAAACAGAGTTCCTCCACAGTCTCTGCTTTAGTTCCTGCCTTGGCTTCCTACCCTGACTTCCCTCACAAAGACTTGTGGCCTGTAAGATGAAATAAACTCTTTCCTCCCGAAGTTGCTTTTCATCAGTGTTTTACCGAAGCAACAAACAGCAAACAATGACAGAGGTTGGTACTGAGGATGGGGTAAAAACCCCACACTGGCATAAAGGACTTACTCCCAGTTAAAAATTAAAGAGATGAGGTCTAGAGAGGCTGAAAGTTTGTGCTGCCTCACATAGACAGTTGCAGAGTCAAGAGTTTCATCTCCGCTAGTTCTTTCAAAGCTTAGGTCCCTTACTCAGCTGCTTCCACAGCTCTGGTTCAAGTCAGCTAGCCTGGTTCTCACAGTTCTATTTCCTTCCTTCCTTACATCCACACTCAGTGTTCCCTCGACTTCTTGAGTTCTCTATCTGTAGGTTGGAGCTGCCCAGGCATGAAGATACTGGGTGCAGTTGCACCTGCCCTAGACATATGCAGACATTGTTCTAATAATTATTCCCCAAGCAGACAGCACAGTACTACTTCACCATGTATTATGCATACCATGTTAAGTTCAATAAATGATCTGGAGATGGTTTAAAGTACTGAGGATGATATGCACAGATTGCATGCAGACAGTTTGTCATTTCCATGAAGGAATCATGGCTCACAGCTGGGTTTTATATCTATAGGGCGCTCTCGAAACAGGGAGTCCCTGGAAACTGTCTCAGTTTTACTTCCTGTTGCTAGATAGCATGACAAAAACAACTGAGAGGAATCATGGGGAGAAGGTTCAGGAGCTAAGATGCTCTACTCTTGCAGAGGACCCAGTTCCCAGCGCCCAAGTCAGTCAGTCACCATCACATGTAGCTTTTATAGCTCTGGGGAATCTGATTCCTTCTTCTGACCTTGGCAGACGCAATCTCCCAACACACATATATGCACATAAATCTTCTGTGTGGGAAGCAACTAAGTGGAAAAAGGGCTTATTTTAACTAAAAATCAGATTCCAGTTCGTCATGGGGAGGAAGTCACAGAGACAGGAACCTGATACAGCTGGTCACATCATACCTACACTGGAGAAACGGTGCACAGAATACATGGCTGCTTAGCCCACTTTCTCTACTCTTGGTAGAGGCAATCAGCTGCAGAATCAGGGTCTCCCGACTAAGGAATGGTTCCACTTATAGCACACGGTCTTCCTACCTTAACTGATGGAATCATAAAAATCCACCGTAGACACACACACACCAGCCAACTCGATCCAGACAATCCCTCATTGAAACTCTTCTCCCCGTGTGGTTTTAGATGATACAGAATTGATGATTAAAACTAACTGAAAGGCACCAAGAGATCACTATATATTTAGTCTTATGGCACAGGGCAATAGAATATAGTTATTGCATGCGGTAGGAGATTAACACCATACTGTAACAAAAGGATTCTGCTATTGCTTTTTCTGCCTTCTTGACATCAGTCACATCTTCTTTTGTTATTTCTTTAG
Seq C2 exon
GTGGTCCAAAGATGGATGCCATTCACCTTGGCATGTCCAGTGCCCCACTGGTGAAGCATACCAACGGGGTTGGACTCAAGGCCCACAGACCCCGAGTCATGTCAAAGAGTGGGCACAGTAATGTGAGAATCGATAAGGTAGACGGAATCTATTTACTCTACCTCCAGGACTTGTGGACAACCGTCATCGACATGAAGTGGCGATACAAGCTCACCCTATTTGCTGCCACCTTTGTGATGACCTGGTTTCTGTTTGGAGTGGTCTACTATGCCATAGCCTTTATTCATGGTGACTTACAACTTGGGGAATCTAATTCCAACCACACACCCTGCATTATGAAAGTGGACTCTCTCACAGGAGCATTCCTCTTTTCCTTGGAATCTCAGACAACCATTGGCTACGGGGTCCGTTCCATCACAGAGGAGTGTCCCCATGCTATCTTCCTCTTAGTCGCCCAACTGGTCATCACCACATTGATTGAGATCTTCATTACGGGGACCTTTCTGGCTAAAATTGCAAGACCCAAAAAGCGAGCCGAGACCATTAAGTTCAGCCACTGTGCTGTCATCAGCAAGCAGAATGGAAAGCTATGCCTGGTCATCCAGGTGGCCAACATGAGGAAGAGTCTCCTGATTCAGTGCCAGCTCTCTGGAAAACTCCTGCAGACACACGTCACCAAAGAGGGAGAACGCATTCTCCTCAACCAGGCCACTGTCAAATTCCACGTGGACTCCTCTTCCGAGAGTCCCTTCCTCATCCTGCCCATGACCTTCTACCACGTGTTGGATGAGACAAGCCCCCTGCGGGACCTCACACCCCAAAACCTAAAGGAGAAGGAGTTTGAGCTGGTGGTACTTCTCAACGCCACGGTGGAGTCTACCAGCGCCGTCTGCCAGAGCCGAACGTCTTACATCCCGGAGGAGATCTACTGGGGCTTTGAGTTTGTGCCTGTGGTTTCTCTCTCCAAAAATGGAAAGTATGTGGCTGATTTCAGTCAATTTGAGCAGATCAGGAAGAGCCCGGATTGTACCTTCTACTGTGCCGATTCTGAGAAGCAGAAGCTTGAAGAACAGTACAGGCAAGAGGACCAGAGGGAGCGGGAGCTGAGGAGCCTCCTGCTACAGCAGAGCAATGTCTGACTCCACCGGCCTCTGGGCGTCTCCTAACCAGGGCTCCTTTCAAAAGCAATGGCTGCCATGAACGTGGGATGGGTGGCCCCACTACCAAATCACACAGACGTTCGTGGCCATCTTCCCCTTTGTTCTGATGGCTGAACAAGCATTTCTGAATATAAAAAGATGTCTTCAGAGTGCCTGGTCAGAGGTGAGCACTCAAATTCAGATTTCCCCCCACCCCTAAAATGGAGCTATACATTGAAGAACTGAGTGTAGGAAGATGGAGAGAATTCCCGCTGGAGGGCAGACCCAGCAGTGCTGACAGTGGATGGCATGTATGCCTACTCAAGAACATCTGCTCATAATGCAAAATATTTATTTACCCACCTAACAAGGGCATTGGTGGCTGAGGTCTGAGGCGTAATTTGCTATTTGCTCATAGCACTGCTTAAGAACTCACTCCTTCTCATGTTCAAGTGCATACGTTTTTATTTGCAATGACGGTTATCTGGAGATGACAAAAAAAAAAAAAGTTGGGAAAGCAGGGTCTTAAAGCTTGCAGAATAATACAGCCGTTTTATTTTTACATTCTTCCATAGACTTTAATTGTGTGGAGCGAACATCATCAAATCAGGAATCAAGAGTTCAGAAAATATGTCCATCTCTTGATTCTGTGGTCCCCATCACTTCTGGAGGAAGCGTGTACTAGCCTCTTTTTCCTTTAAAATGTCCTTCACAGACAAACCAAATAGCACCATTTAGGGACATATTGGCAACACGCACAGCCGGGTTTCAGCCAGGCTTCCAGAAACCTCAATGTTGCAGGCTCTGAGTAATGTTTGCAATGTCATCTGTCTAGATCCACGTTGGAAAAAAGAGCGTGTGCGTTCCGAGTCCATGTGCCCTCCAGGTCTGCCCTCTGTCAGCGTTATCAGTCGACACATCCATCTCTCAGCTATCTCAGCTTTTCCCTGGGAACATACCTTAGCCACAAAGAAATTGTACAGAGTTACTAGTGTCTTAAGAATTAGACAGTTCCCTGAGAGCTGTGACTGTCACCATTGTGTTAATTCATGGACTGAAGACGGCAGTCACCACAAAAGAAAACTGAAACTGTGTCACAAATAGGAAGTCTGCATTAGATGCTGCAGTTTGCAGCTCATGACACAGAGAAGAGGAGCCAAGGGGGAAAGGTGTCTGTGAGCAAGAAGAGCCCTTGTGCAAGAGCCTAGACAAATACGTAGTACAACTCAGTGTTACAGGGGTAACATTTTACCTCTGAGAAATATAGGAGTATAACGCCTGCATTTCCTTGGGAAAGAGAATTAAGCAGGCTAGGATTGACTGAATAGATAAGCGCTGTGTGCTCATTTTATCTGGACAAACTAGAAATTTACTCAAGTGCCATGTAACCATGAATGTACAGGCAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACATGTTCCTCATACAATATGCCAGGGTGTGCTCTGGCTCTGCAAACACAATACCAGGCATGTGGGATCAGAGGTCACACTAAGAAAGTCTACCAAGTTATCCTCATGCTTATCTGATTCTTTAAGAAAAATGAACATTTGGACCCAGAGAAACTGGGGAGACTTTAGCTGGATCTAGCTGTTAGTGTGAACAACTGCACCCCCAGTCATAACCTTGAGAGACCACTTTCACACTGTCTTTCCTTCAAACAACAACAAAATGTGGAAATAAAATCTTTGGGTTGGAACCAAGCTAATGCAGTGAGAGTCTGAGACCCATGGAGGAAAAGTTTGCAGAACGATTTCTATTAAGGAGGATTTAGGGCTGGAGAAATGGCTCGGTAGGTAAGGGCTACAGCTCAAATGCTCAACACCCTTGTAAAATGCCAGGGAGGGGTTCACAAGCCTAGAACTGCAAGATCATGGGGAGCTGAGACAGGGGGATCACTGGGACTTACTGGGCACCAGAGAGCTCCAGGCTCAGTAAGACACCCTGTCTCAGAAGAATAAGGCAGATAAAGGAAAGTGACCTACTCCTCTGGCCTCTAGGCACATGCATGCTCTCCCCACTCCACATACCAATCTGTCTGTCTGTCTCTGTCTCTCTCCCTGTCTCTTTCTGTCTCTGTCTCTCTCCCTGTCAATCTCTCTCCCTCTCTCCCTTTGTCTCTCCCTCCCTGTCTCTGTCTCTCCCTGCCTCTCCCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAGAGAGAGGTTAAATCATTCAAGAAAATGTTTTCCACTCCTTCCTGACTTCATGGCAGCCTGTGTTAGTTTCCCCCTTTTTCAAACTGTTAGATGTTTGCCCGCTCAGACATTAGTCCCTTTCACTATTAATCTTGTGTATTTGTGTCACATATTACAGTAGAATCAATAGGAAAAATCGTGCCACGAGGGCGTTTGTGGTGGCTTTTCTATTGTTTTATGAAATTCCTCACCCAAAATCCACTTTGGTGGCCATCTGAATCTGATTAATCCCAGTAACTCAGCTTGCTTCTGTTGTATACGGTACAAATGGTAACACGCCAGTCTCAAAATCGTCTTTGTATAATCACTGAGCATATTATATTCATCCAGATTTGGAATATCTGATCATTTGAAAGTTTTTTGTAATACACACCAATATATTCGGTGCCTTCAAAACCACTGTATGGGCCAGGTGTGCTGGTACATGCCTGTGATCCTAGCACATGGGAGGTGGAGGTACCAGGATTAGGAATTCAAGGCCAGCCTCGATGACATAATGCCTCCACGACATGAGCCCCTCTAACAAAATATGTAATGTTTAGGTCAATAAATCATATTGTAACATAATATCTAGTAATTCATTCTATAGTTGACTGGTTTGAAACTTAACATTTTTCAGAATCCCTTAGATATTATTTTGAACCACATATTCTCATGTTAATGTACTAGTAGAAGAATTAAATGATAAGCTTACTGGATGTCATCTAGACAGCTTTCTGATGGCAACAGATTCAGAAGAGTCATCAAAACAATAGAGTGTTTAACCTGAAGAAAGCTTTGTGTTTCTTCAGAAACTCAATGCATTCACTTTCTCTATGATTCTGAAATTGTTCTTCATTTGGGAGACCACAGGGCAGCAGATCAATGTATACCACAAGCCATGTCTTCTGCCTTGCTGCCTGTGACCGCAGACAAAGGAGAGACGCACCTCTGACCCATACAGTGAGCCACTTTGGGTCGAGGGTGGGAGTTAAACCTTGGTTCTCTGTTTTCTTTTTCATGGGGAAATTAACAGTGACGTTTTTTAATATCTAAAAACAAATGCATAGTGGGAAGAAAAAATAATATTCATTAGAGTGGATCAAATATTTAGATAAATGTAAACACCCATTTTGTTTGATCTTTAATTGAATTAAATTTCTACTTTGAACTGGCTGTGGTTTTGATATCAATGAAGTGTAAAATTATATACATATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609-Kcnj15:NM_001039056:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=WD(100=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: