HsaINT0084457 @ hg19
Intron Retention
Gene
ENSG00000157551 | KCNJ15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:HGNC Symbol;Acc:6261]
Coordinates
chr21:39668848-39673746:+
Coord C1 exon
chr21:39668848-39668945
Coord A exon
chr21:39668946-39671165
Coord C2 exon
chr21:39671166-39673746
Length
2220 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
ATCTTTGTCATTTCTCTAAGTGT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GCAGTAGCAGAATCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGTTCTACCTGCCTTGAAGAAGACACCTGACCTGCGGAGTGAGTGACCAG
Seq A exon
GTAGTAGACGGTTCTGAGGGCATCACACACTTGAGGGAGGGAGGAGGACAGAGAGGGCCATGGCACCCTTTGACTGCTGAGTGCCAGCTGCTCTCTTTCCCACTGAGAAATGCTGCCCCCAACACACCCAGAGGCTCTAGGTCTTGTCCTGTGATTTCTGTCCACCAAGACTTGATAGGAGGTATGATAGATGCCATTAACTCCAGCACTATATACACAGGACTGCAGCAAAAGCGCTCTCAGCAGAAAGAGGAAACAGATACAGTTCATCCCAAGCCTGGCTTGCTGCCCCTTTGAAAGAGAGTTTCAAACAGAAGCTTCATGGTGCTGCCTTCATAAAAACAGGGCCAAGCTTTCCAGAATCTGGCAGAGGGCTGAGTGCCCGCAGGACACTTGTGTATCACTCACACTGGAAAACTTAATCCTCTGTTTTTATTTCAGTGGATTGAATGGCATGCAGTTTCCTCAGCAGCTTAAAAAAAATGCATGCAGTCACTTGCAGACAGGCTGCATTTGTCTCTGCTGGTGCTCATGTTACAAGTTTGTCTGTGCATTTGGGCATGCCAGAATGGCGTTTCATTTCCAAACCTTTATTGTGGTCACTTTCCTCTTCGTTACACTGAGAAGTGTTGCTGAGGGTATAGTAAGGCCCTAGTTCATCAATTATATCCTGTACTTTTCTTCTAACTTGATCCCAAGAACAGTGGAATTTGCTTCAAGGTAAACAAATTTTGAATAATTTATGGCCCTTCTTTTCAACAAAAATGAAAACGTGACTTTCTAAAGAAAAGTCAATTACAAGGGGGCATTTAGTAAATAACACACTCTTAATAAAGTAACAGGAAAATTAAAATGCCCAGCAGACCCATTGCCTCCTGAACAGGTGTTTGCTGCTAATGGATACAGTTTCCATTTCCTTGAAGGGATTTGCCCAGAGGATTACTTTCACAACTTCTATTGAGATAATACTGCTCTAACAGAAAGAGCAATGCATGAATCTGTATATCAGTTCCTTAATAAAAGGGAAGATTTTTTTAGTTCCTAAAATACCAATGAGGTGAAGAAAAACATGCCACCCAGGTAAAGTTACTCTGTAATCACCCGCATTATCTTTTTCAAGGAATGTGGGGGAAATTTATGTCAGTCATCAGGCAGGTACTAGAAGATGCTAGGGGCCTCACAGACAGCTTGTTCCCGGCTGTTAACATGGAGCAGAGCGTTCCCTGGGGCTGAGCATGGGAGCCCAGCACTTCTTATAGGTAGGTCTTTCCTACTATAATATTAGATGCCTACACTTATTGACTTTTTCATTTGCTCTTTAAAATAGATTTCTTCTGCTGGTTCTGCTTAGTTCTAAGGAGTAAGGTAGAATTTTGGTGCCATACCTAAATATCACGTCTAAAATGACATTGGTAGCACTTTTCCAAGAATAACCAGCATATTGATCAAGCCATTAATAAAGCCTAATTATTTGCTTTAAGAATGTTTTTGGTTGTTTCAAACTGAGTTTTTTCCAAAGTCATAACAAAACTAGGAGAGGCTGTAGATTCTTAATTATTCATTAGATTAGGGGGAAAACGAATTGCTATTACAAAGAATATCATGCAAAAAATAGGTTTTAAAAAATGCATTACTACTGAGTTTTAAAAATGTATACTAACATTCTCCATATCAAGAACTGTTTCATGGATGGTAGATTTTAGTTATAGCAGTACTGGACTTACACTCAGTCAAATAATTTTAAATTTTCTATAATTGGGAATACATGGTAGCTGAATATAAGCAAACATATTACTCTATGAAATAAATGCATAAGAGTTTGTTATCACAAAAAACAGCATAACATTATTTTTTTGAAACACAAGGCTCTGTTTTAACACTTTACCTTGTTTAATAGTAACAAAACCCCTGAGGAATAGGTTGTATTGCCATTTTAAACACTGGAGAGCAAAGGTCCAGAGAGGTTAAATAGCTTTCTGCAGGTCACACAGCTGATGAATTGCAGAGTCAGCATTTAACCCCGGTCTGCTTTTCTGCAAAGCCTCTGCTCCTCACTCTACCCTACCGACCACCTAAGTATAGATCAGTTAATCTTGCCTTCAGAATTCTCCTTTCTTGTGTACTTCCATGTACATTCATACTTACTTCACATGATGATTCTATTTTCTGGAAGTTCCACCACATATGGCGATAATGAAACATCTTTGTCATTTCTCTAAG
Seq C2 exon
TGTTTCCAGAGCCTGGCAATGGATGCCATTCACATCGGCATGTCCAGCACCCCCCTGGTGAAGCACACTGCTGGGGCTGGGCTCAAGGCCAACAGACCCCGCGTCATGTCCAAGAGTGGGCACAGCAACGTGAGAATTGACAAAGTGGATGGCATATACCTACTCTACCTGCAAGACCTGTGGACCACAGTTATCGACATGAAGTGGAGATACAAACTCACCCTGTTCGCTGCCACTTTTGTGATGACCTGGTTCCTTTTTGGAGTCATCTACTATGCCATCGCGTTTATTCATGGGGACTTAGAACCCGGTGAGCCCATTTCAAATCATACCCCCTGCATCATGAAAGTGGACTCTCTCACTGGGGCGTTTCTCTTTTCCCTGGAATCCCAGACAACCATTGGCTATGGAGTCCGTTCCATCACAGAGGAATGTCCTCATGCCATCTTCCTGTTGGTTGCTCAGTTGGTCATCACGACCTTGATTGAGATCTTCATCACCGGAACCTTCCTGGCCAAAATCGCCAGACCCAAAAAGCGGGCTGAGACCATCAAGTTCAGCCACTGTGCAGTCATCACCAAGCAGAATGGGAAGCTGTGCTTGGTGATTCAGGTAGCCAATATGAGGAAGAGCCTCTTGATTCAGTGCCAGCTCTCTGGCAAGCTCCTGCAGACCCACGTCACCAAGGAGGGGGAGCGGATTCTCCTCAACCAAGCCACTGTCAAATTCCACGTGGACTCCTCCTCTGAGAGCCCCTTCCTCATTCTGCCCATGACATTCTACCATGTGCTGGATGAGACGAGCCCCCTGAGAGACCTCACACCCCAAAACCTAAAGGAGAAGGAGTTTGAGCTTGTGGTCCTCCTCAATGCCACTGTGGAATCCACCAGCGCTGTCTGCCAGAGCCGAACATCTTATATCCCAGAGGAAATCTACTGGGGTTTTGAGTTTGTGCCTGTGGTATCTCTCTCCAAAAATGGAAAATATGTGGCTGATTTCAGTCAGTTTGAACAGATTCGGAAAAGCCCAGATTGCACATTTTACTGTGCAGATTCTGAGAAACAGCAACTCGAGGAGAAGTACAGGCAGGAGGATCAGAGGGAAAGAGAACTGAGGACACTTTTATTACAACAGAGCAATGTCTGATCACAGGGGCGCCATCCAGGTTTAACCCTGCAAGCTGTTTCCACATCAGAACTCCCTTCAAACACAAAGATTGCTGTGAAAACGAAAATGTGTAGACGCACTCTCAAAAACTGCACGGACATACAAAATCAATCTTTTCCTTTGATCTTGTGGCTAAACCAGCATTTCTGTGTTTGAGAGATTTCCTGTTAGGTGCTTCGTCTGAAAGTGAACTCTCATAATTCAAATTGTATAAAATAAAGCTACATTTCTAAGAGCTTGGTGTAGGGCAATTGGAATAATGTCCTGTTAGATAAACAGACATTTAGCAATCCTGACATTAAAAGGAAATGTATTTCTATACAAGATTATTAGCTGTAATACAAGATATTTATTTAACCAATGACCTTATGGCTGAGAGTTGAATTGTGGTTCAGTATTCATTGATCTCACTGCTTTAAAACATGCTCTTTTTGTTCAAGCAGGAAAAATATTATATCTAATTATGTCTATGTGGTAATACCTAAAAAGAGGTAGAGAGACTCTATGTTCACAAAATATAGTAATTTCATTTTTACCTTTCTTCAGTGGACTGAATTGTATGGAAGGAAATTGATCAGATCTGTAATTCACAACTGTGGAAACCTACACAAATGGGGCTGATGCCATTGTTTCCTCTATTTTATTTTATTTATTTTTGAATCCACTATCTCTTTCCATTCAAAATATTTCCATTCAAAATGTGGTTCACAGACCCGCCACATCAGCACCATCCGAGAGCTTATTAGTAATGTGTAGATTCTCATGTCCCAGCCAGACTTACAGAATTGGGGTCTGTATCTTAACAAGAACCCCAGATGATTTGTGTACAAATGAAAGTTCGAAAGCTGTGCTCTGGACAGTGTTCTCAAAGCAACTTTCTGAAGCCGTGTGGAAAACTGACTCTGTGTGGGTCCCGTATCCCTGTGGCATCCAGACCTGGCCTCTCTTCATTTCATTATTATTGGCCAATATTTCTTTCAGCCATTTCATTTCTTATCTATTAAAATGGCTTGCCCATAAAGGAACTGCATAGGATTATCCCCTGACATTCCAAGAGCAAAATAAAGCTCTTGAGAGTAATTGTTGTCTCAGTCATGCTTGCTGATTACAGTTAGCACAAAAGAAAAATTCAGCTGCCTGACAATACAGGAAATGTTCTCAGATGCTGATGTTTGTAAGGTCCGGTGGGGCCATGAGGAAGAAGAGGAGCTGAAGGTAAGAAACTCATAAACAAGATGACTCTTTGATGCATGAACAAGATTTGAAAATCTCAAGCCTGTAAAGAATACCCCTGCTATTTAAATAAAGCTCATACCAAGAGGTAACATTTTGCCCCGGGCCAAATTCAGGGGTCTAGTGCCCTGCATTCCTTTGAGGCAAAAAATAAATGGGCTATGACTGGTTAAATGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551-KCNJ15:NM_170736:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000331698, ENSP00000381899, ENSP00000381901, ENSP00000381902, ENSP00000381904, ENSP00000381905, ENSP00000381907, ENSP00000381911, ENSP00000392951, ENSP00000400849, ENSP00000413013, ENSP00000414487, ENSP00000447111, ENSP00000448676, ENSP00000448770, ENSP00000448886, ENSP00000449140, ENSP00000449419, ENSP00000450254
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)