RnoINT0077846 @ rn6
Intron Retention
Gene
ENSRNOG00000001656 | Kcnj15
Description
potassium voltage-gated channel subfamily J member 15 [Source:RGD Symbol;Acc:621662]
Coordinates
chr11:35580277-35585390:+
Coord C1 exon
chr11:35580277-35580362
Coord A exon
chr11:35580363-35584093
Coord C2 exon
chr11:35584094-35585390
Length
3731 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTTCTTTGTTATTTCTTTAGGTG
3' ss Score
11.13
Exon sequences
Seq C1 exon
GCCATAGCACAGCCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGCGCCACTTGCCCTGCAGAAGATTCCTGACCTACAGA
Seq A exon
GTGAGTGACCAGGTAGTAAAGGGCTTGGAGGGCAGAGGGTTATAGACTGGGGGCAGGGGTTGGAGGCTAGAGGCTGCCCTGAGACCTGAGACTGTCCCTTAGCTGTTGTTTCTCCCTCAGAGGGATTCTGAACCACGCACTTGCAGACACAAGTCCCAAGCCCTGATCGCCCGGAGGGGAGGCACTGCTCATTTTCACACAGATCCCAAAGCCAGGTGTTCAGGCTTTCGACCAGAGCTTACCAGAAACAGGAAGGCACACAGTTCATCCCCAGCCAGTCAACTCCCCAGCAAGAGCAGGGGGAGAAACAGAAGCCGCACAGCCCTTCTTTCCAGGGAACAAGGCCACAGTCTCCGAATCTGGAGAGTGCTGTACAGGAAGCACCTCCTCTATGTGCAGGACACTCACGTTTCACTTGTCCTGGAAAAACTTAAGCCCTTGTTTTGGATTCAGTGTACTGAGTGGCACGCGTGTTCCCCAGCCGTTCTCTGTCCTCTATCTTTCCCCTCAGTTCCACCTGGTCACTTGCATGTGAGCTGTGCTTGTCTTTGGCAGAGCCCCTGTCATGGCCTGCATCTGCATTCAGCATGGCAGGCCGTTTCCAAGCCTCAGTGGGGTTACTTTCTTCCTTACTGTGAACTAAGGAGCGTGGTCCAGGGCACAAGGAGGAGGCTCCACGCTCTTTGCAGTGTCCCTGGCTCTAAGTAACAGATCTTAGGAAGTGTAGAGTAGGCCTCAAAACATTGAAACTCTAAGTAACTTACAGCCTTCCTTTTCAACAACAACAAAAAAAAGTATCTTTCCAAGAAAGAATAAAAAGGCCATTTCAAGGGTGTTCATAACGCAACAGGAAGATTTAACGGCCCGTGGCACCGTTTTACATCCTGAGCAGGTGCTGGCCTTCAATGGGGACCCTTGTTTCCACAAAGGGATTTGCCTGCATCATTCATTCTAAAACGAATTTTATTGCCACAATGTCCCTCTACCAGAAAGATTGGGGCCTGAATCATAAGGCACTGACTATCCATTTATTGCTTCTCAAAAGGGGGATTTTTTTTTTACCCCGATTCTTAAAATACCAATGAGGTAGGTTAAAAAGAAGAACCAAAATAAAACATGCCAGCTAGGTAGAGTTCCTCTGAATCTCCAACGTTATCTTTTCCAAGGACTGGAGGAGTCATCAGTCTCGTCAGCATCAGCAGGCAGGGGCTATAAGATGCTCTGCAGCCTTGGGGCCAGCTCCTCCCCAGCTGCTGGCTCTCCAGGCAGGGCAAAGCACTCCCCACTCCCCGAGGCTGAGCGGGGAGCCCAGAGCTACTTCTCGGTAGGTTGTTTTCTTTTTTCTGAGACTATGTTAGATTTCTTCTTCGCTGCACATACTCTTTGATTTGTTCTTGAAACAGGCTCCTCTAGCTGGTTCTATCTTGATCTAAAGAATAGAGCAGAATTGTGTGTGTACCTCAATATCACACCTGAAATGACATGGGTAGTGCCTGTCTAAGAATCACCTGCATGTCAGTGGAGAGGTTAAGAAAGTTTAATCACTTGCTGCTAGTGGGCCTTTAATGGCGTGATAATTGGGCTTTTCCTAAACATTAAGTTATTCACTTGGACAGGGGTGGCAAAAGAATTGCTCCAACATATGCAAGTTAAAAGGGAGGTCTGAATGCGTATCGATACTGCTTTGTCTCTGAATACTTGGGGGTAATATTGCTATACCCAAACTATTTTATGAGTAGCCAATCACACACACACACACACACACACACACACACACACACACACATATGTATAATTTCATATGTAAGATCAGTTCTGGATCATTAAAGCTGACTCTTCGTAGCTGCTGGTAATGTTCTGTAAGCTATCTGCATAACTTCTGGTATCATCAAGAGAAAAATAACTCATTTCGTTTTTAGAATAAGGCTTTGCATAGGTGCTAATTTAATCATCACAAAACCTTAAGGAGTAGGACCGACATAGTTAGTTCTTCCTTATCTAACCATAAACATTCAATTACCTAGAAGGGGGCAATCTCAACTGAGGAATTACCTCACCGGACTGACCTGTAGGCAGTTCTATGGGGGCGTTTTATTGATTGATGATTTATGTTGGAGGTACCAGTCCACTGTGGGCAGCGCCATCCTCTAGCAGGTGGGTCTGAGCTATATAAGAAAGGTAGCTGAGCAAGACAGAGGAAGCAAGCCCATAAACAGAGTTCCTCTGCGGTCTCTGCTTCAGTTCCTGCCTTGAGTTCCTACCCTGGCTTGCGGCCTGTAAGATGAAATAAACCCTTTCCCCCAAAGTTGCTTTGCATCAGTGTTTTATCAAAGCAACAAAAAGCAAACAAACACAGACAGAGGTTGCTACTGAGGATAGGGTAAAAACCCACACAGGCATAAAGGAATTACTCCCAGTTAAAAATTAAAGAGCTGAGGTCTAGAGAGGCTGAAAGTTTATGCTGCGTCGCATAGACAATCAGCTGAGGAGTCAGAGTTTCAAATAGCTCTTCCAAAGCCTCTGTCCCTTGCTCTGCTGCTTTCACAGCTCCAGTTCAAGTCAGCTAGCCTGCCTTTCACAGTTCTATTTCCTTCCTTACATCCACACTCGGCATCCCCTCTACCGCCTGATTGCTCTATCTGTTGGTTGGTGGGTAGAGGGGTAAGGACACTGGGTGCAGCTGCGCTTGCCCTGGACATATGCAAACAATGTTCTAATGATTATTCCTCAAGCAGACAGCATGGTATTACTTCACCATGTATTATACATACCAGGTTAAGTTCAACAAATGATCTGTGGATGGTTTAAAGTACTGAGAATGATATGCACAGATTGCACGCAGACAATTTGTCATTTCCCTAAAGGAATCATGGTTCACAATGGGGTTTTGTATCTACAGGGCACCCTAGAAACAGGGAGCCCCTGGAAACTGTCTCAGTTTTACTTCCCTTGCTATGTTAAAACAGCCTGACAAAAGCAACTTAGGGGGGTTATGGAGAGATGGTTCGGCAGTTAAGATAGCTTACTGCTCTTGCAGATGGACCCAGTTCCCAGCACCCAAGTCAGACAGTCACAATCACATGTAGGTCTTCTAGCTCTGGGGAATCTGATTCCTTCTTCTGGCCTCAGCAGATACAACCTCCCATCACACACATATATACATAAATCTTTTGTGTGGGGAACAACTAAGGGAAGAAAGGGCTTCTTTTAATTCAAAATTCAGATTACAGTTCGTCATGGGGAGGAAATCACAGAGACAGGGGCCTGATACCGCTGGTCACATCACCTCCAGACTGGAGAAACAGAGCATGGAATACGTGGGTTGCTCAGCCTACTTCCTCTACTCTTAGTAGAGGAAATCAGCTGCAGAGCCAGGATCCCCTGACTAAGGAATGGTTCCACTTATAGCACCCAGGTTTCCTACCATAACTGATAGAATCATAAAAACCCACCATAGACACACCCACAGCCAACTTGATCTAGACAATCCCTCATTGAAACTCTTCTCCCCTTGTGGTTTTAAATAATGCTGAATCGACAGTTAAAACTGAAAGATACCAAGGGACAACGGTGTGTTCAGTCTGATGGCACATGATAATAGAATATGGTTATTGCATGTGGTAGGAGATTAACACCAAACTATAACAAAAGGATTCTGCTATTTCCTATTCTACTTTCTTGACGTCCTACCAAAGTGTTGTGAGACACATCTTTCTTTGTTATTTCTTTAG
Seq C2 exon
GTGGTCCAAGGAGCCTGAGGATGGAGGCCATTCACATTGGCATGTCCAGTGCCCCACTGGTGAAGCACAGCAATGGGGTTGGACTCAAAGCCCACAGGCCCCGAGTCATGTCGAAGAGTGGACACAGCAATGTGAGAATTGACAAGGTAGACGGTATCTATTTGCTCTACCTCCAGGACTTGTGGACGACAGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACCTTTGTGATGACCTGGTTTCTTTTTGGGGTGGTCTACTATGCCATAGCTTTTATTCATGGCGATTTAGAACTCGGGGAATCTAATTCTAACCACACGCCCTGCATTATGAAAGTGGATTCCCTCACAGGGGCATTCCTCTTTTCCTTGGAGTCTCAGACAACCATTGGCTATGGGGTCCGTTCCATCACAGAGGAGTGTCCCCACGCTATCTTCCTCTTGGTTGCCCAACTGGTCATCACCACCTTGATTGAAATCTTCATTACTGGAACCTTCCTGGCCAAGATTGCAAGACCCAAAAAGCGAGCCGAGACCATTAAGTTCAGCCACTGCGCCGTCATCAGCAAGCAGAATGGGAAGCTATGCCTGGTCATCCAGGTGGCTAACATGAGGAAGAGTCTCTTGATTCAGTGCCAGCTTTCCGGAAAACTCCTCCAGACACATGTTACCAAAGAGGGAGAGCGCATTCTCCTCAACCAGGCTACTGTCAAATTCCACGTGGACTCCTCTTCCGAGAGTCCCTTTCTCATCCTGCCTATGACCTTCTACCATGTGTTGGATGAGACGAGCCCCCTGCGGGACCTCACACCCCAGAACCTAAAGGAAAAGGAGTTTGAATTGGTGGTGCTTCTCAATGCCACCGTGGAATCCACCAGCGCAGTCTGCCAGAGCCGAACGTCTTACATCCCAGAGGAGATCTACTGGGGCTTTGAGTTTGTGCCTGTGGTTTCTCTCTCCAAAAATGGAAAGTATGTGGCTGATTTCAGTCAATTTGAGCAGATCCGGAAGAGCCCGGATTGTACCTTCTACTGTGCGGATTCTGAGAAACAGAAGCTTGAAGAGCAGTACAGGCAGGAGGACCAGAGGGAACGTGAGCTGAGGAGCCTTCTACTGCAGCAGAGCAACGTCTGACCCCGGCCGGCCTCTGGGCATCTCCTAACCAGGGCTCTTCTCAAAAGCAACGGCTGCCATGAACATGGGATGGGTGGCCCTGCTCCCAAGCCACACAGACGTCCATGGCCATCTTCCTCTTTGCTATGGTAGCTGAACAAGCATTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001656:ENSRNOT00000002259:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=WD(100=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]