BtaINT0079669 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000973 | KCNJ15
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 15 (KCNJ15), mRNA. [Source:RefSeq mRNA;Acc:NM_001099018]
Coordinates
chr1:152301743-152306134:+
Coord C1 exon
chr1:152301743-152301847
Coord A exon
chr1:152301848-152304311
Coord C2 exon
chr1:152304312-152306134
Length
2464 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
TTCCTTTGTCCTTTCCTTAGGTG
3' ss Score
11.43
Exon sequences
Seq C1 exon
GAAGTAGCAGAGTCCCATGGTAGCCAGGTGGGCGAAGGGGAGTGAGGACCATCCACCTGCCTTGGAGAAGACACCATCTGACCCGCCTGCCGAGTGAGCCCCCAG
Seq A exon
GTAGCATGCGGTTCTGGGGGCACGGGGTGTTGGGAGGGAGGGAGTGGGTGTTTAGCCTTGGGGTGCTGTCCACCAGCCACTCTTTTCCACAGTGAGAGGCTGATCCCAAGGCCCTTATCCCCATCCATCTAGGTTTTCTTCCCCCGTATATGACCCCCATCCTCAGATGGCCGTTGGGGTCATTGATTCCAACAACAGTTGTGTAAAACTGTAGCACAGGAGCTTTGGGGAGAGAGAGGAGACAGAGTCAGCTCATCCCTAGCCTCTGCCCCTTTGAAGGAGAGGTTAAAACAGAAGCGTCGTGGCCCTGCCTTTGTAACAACAGGGCCAAGTCTCCCAGCCTCTGGCAGAAGGCTGAGCTGGGAGCTTTGTTTGTGCCGCAGGACAGTTGTGTACCATGCGCACAAGAAAACTTAAGCTTCTGTTTTCACTTCGGTGGGTTGAATGGCATGCACTTGCCCCTAAGAGCTTTGTTTTATTTTAAGCTCGTGCAGTTACTTGTCCGTAAGCTACGTTTGTCTTTGCCAGCGCCCATGTTCTGAGCTTGACTAGGCACTTGGGCATGCCAGCCTGGCATTATGTTTCCAAACTTCCACTGTGGTCGCTTTCCTCTTGATTCCTGAGAGGGGCTGCTGAGGGTCTGATAAAGCCCACACTAAATTATATCCTGTACTTTTCATCTAAGTGTTAGCCACTCAGTCGTGTCTAACTCTTTACAACCCCATGGACTGTGGCCCTTTAGGTTCTTCTGTCCATGGGGTTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGAGCTTCCTGATCCAGGGATTGAACCCGGGTCTCCTGTATTGCAGGCAGATTCTTTCCTGTCTAAATCACCAGGGAAGCCTACTTTTCATCTAGACTGGTCCCCAAATTAGTGGGATAGGCTTCAACAAGAAAAATAAATTCTGGATAACATAGGGCCATTCTTTGCAAGGAAAATGAAAAAGAGACTCCCCTTTTCTGAGAAAAAAAAAAAAAAAGATCATTTCAAGGGGCAGGCAGTAAATGGCACACTTTAACAGTGCAAGAGGAAAACTAAAAAGCCCAACAGATTAGCCGTATCCTCAACAGGTGTTAGCCTTTAATGGATACAGTTTCAGATTCCTTGAAGGGATTTGCCCAGAGGATTATTTTAGAAACTCTGCTGAGAAAACATTATTCCAACAGCAAAGATTACTGCATGAATCATAGACCACTGTATACCAGTGTCATTTTAAAGGGAGAAATTTTTTATTATTATTAAAATGCCACTGAGGTGGAAAATCATGCCAACCAGGTGGTTACCCTGTAATCATTCACATTATCTTTTCCAAGGAATGTAGGGGTAACTTATCTCAGTCACAAGGCAGGCATTATAAGATGCTGTGTGGCCTCACCCCAGCTTTTCCCTGTCTGTAAATGCGGAGCGTTCTCTGGGGCTCAGCATGGCAGCCTAGTACCTCTTGCAGGTAAGTCTGTTCTGCTACATTGTCAGATGCCTGTACTCATGTATTTGTTCACTAGCTCTTTAAAATAGATACTTAGGCTGGTTCTACTTAGCTCGAAAGAAGTAAGGCAGGATTTTTGTGCCTTACCTAAATGCCACGCCTAATATTCTATATTGATAACTTCTATCTCAGCATAACCAGCTATTAATAAAGTTTGATTATTTGTTCTAAGTTTGTTTTTGGCTGTTGGATAACTTGATCTTTCCCATTGTAATCAAAAACTGGGACAGATCAAGGATTCCAAATAATTCATCAGACTATGGGGGGAAATCAATGGCTATTAATGGCTATTGCTATATCATGCAAAAGAACAGCTTTAAAAATTTTTTATGAATAGTACCCAAGGTTTTAAAGTTTGTGCTAACATTTTCCATCACTATATCAAAAAGTATCTTGTGGATGGTGCATTTTATTTATATCAGTACTGGCCCTATGCTAAGTCAACTTATTTTTTAATTTTCTATACTTGAAAATCCTTGAAAGCAGAATATACATAAATATTCATAATACTCTGTGGGGTGGATGCTTGTGAGTATGATATCAGAAAGAGAAGATTTGCATTTGAGTGTGAAGTTCTGTTTTGACACTTTACAGCCATTATCTCATTCAACCATCACAAAAACTCTGAGAAGTAGACTGTATTCCTAGTTCACAGATTAGGTAGCTGGGGTCCAGAGAGGTTAAATAGCATGCCCCAGTCACACAGTGAGTAAGTTGGAAAGAAAGAATTTAACCCCAGTCTCTTTGTCTCCAGTCTCTGCTCCACACTCTCTCCTACCACCATCCCCAGGTACACATCCATGAATCTGGCCTTCAGTCTTCACCTTTCTTGTGAACTTCCGTGTACATTCACTTTTATCTCATAGGAGTATCCTGTTTCTACTTTCTGGACACGTGACAGTAAGGGGACATCTTCCTTTGTCCTTTCCTTAG
Seq C2 exon
GTGGCCCTGTGAGCTGGTCTATGGACCCGATTCACATCAGCATGGCCAGCGCGCCCCTGGTGAAGCACACTGCTGGTGCTGGCCTCAAGGCCAGCAGACCCCGAGTCATGTCCAAGAGCGGGCACAGCAACGTGAGAATTGACAAAGTGGATGGCATATATTTGCTCTACCTCCAAGACTTGTGGACTACCGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACGTTCGTGATGACCTGGTTCCTGTTCGGGGTGATCTACTATGCCATCGCCTTTATCCATGGGGACCTGGAGCCCAGTGAGCCTCCTTCCAATCACACCCCATGCATCATGAGAGTGGACTCCCTCACTGGGGCGTTTCTGTTTTCCCTGGAATCCCAGACGACCATCGGCTACGGAGTCCGTTCTATCACCGAGGAATGTCCTCATGCCATCTTCCTCTTGGTGGCCCAGCTGGTCATCACCACCTTGATTGAGATCTTCATCACGGGCACCTTCCTGGCCAAAATCGCCAGACCCAAAAAGCGGGCGGAGACCATCAAGTTCAGCCACTGCGCCGTTATCACCAAGCAGAACGGGAAGCTGTGCTTGGTGATCCAGGTGGCCAACATGAGGAAGAGTCTCCTGATCCAGTGCCAGCTCTCGGGGAAGCTCCTCCAGACCCACGTCACCAAGGAGGGCGAGCAGATCCTCCTGAACCAGGCCACCGTCAAGTTCCACGTGGACTCCTCTTCTGAGAGCCCCTTCCTCATCCTGCCCATGACGTTCTACCATGTGCTGGATGAGACAAGCCCCCTGCGGGATCTCACCCCCCAAAACCTGAAGGAGAAGGAGTTTGAGCTGGTGGTCCTCCTCAATGCCACCGTGGAGTCCACCAGCGCCGTGTGCCAGAGCCGCACATCTTACATCCCGGAGGAGATCTACTGGGGCTTTGAGTTTGTGCCTGTCGTCTCTCTCTCGAAAACCGGCAAGTACGTGGCTGACTTCAGTCAGTTTGAACAGATCCGGAAGAGCCCGGATTGTACCTTTTACTGCGCGGATTCTGAGAAGCAGAAACTCGAAGAGAAATACAGGCAGGAGGATCAGAGGGAAAGAGAGCTGAGAACGCTTTTGCTGCAGCAGAGCAATGTCTGACGGCAGTGGTGTCGCCTCGGCTTATCTCCGAGCGGCTTTCGCATCTGAGATCCCTTCCAACACAGAGATCACCAGGGAACTGAAAATGTGTGGACACACCCTGAAACACTGCGCGTGTTACAGACCTGTTCCTCTGATCTGATGGCTTTAAACAACCTTTGCCACATCTGAAAGGGTTCCTTTCTTCAATGCTCTGTCTGAAGCGAACTCCCTAAATTCAAATTTTCCAAAAGGGGGCTGCATTTCAAAAAAGCTGGTGGAGGGCTATGGGAACAATGTCCTGCTGAGTGGACAGACATTTCAGGATGCTGATACTGAAAGGAAATGTACTTCTTATACAAGGACGTCAGCTATAATATGAGGTATTTATTCAGTCCAAGTATGAAAGACATCACAACCAAGAGCTGAAATGTGGTTCGGTATCCACTTACATTGTTGCTTTAAAACACACTCGTTTTTTTCAAGCAGAGAAAACAGTATTTATAATGGAGGCTATCTGGTCAAACATAAACTGGGGCAAAGGGACTCTGTATTCACAAAGTATAATTCCGTTTTTACCTTTTTCAGTGAATGTTGTTGTATAGAGTGAAATTGATCAAATTAGAAATGAACTGTTGTAAAAATATGCAAATGGAGCTGATGTGATTGTTCACATTAAATTTTTTGTTGAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000973:ENSBTAT00000001288:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development