MmuINT1021605 @ mm10
Intron Retention
Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95291811-95300211:+
Coord C1 exon
chr16:95291811-95291896
Coord A exon
chr16:95291897-95295590
Coord C2 exon
chr16:95295591-95300211
Length
3694 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTCTTTTGTTATTTCTTTAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
GCCATAGCAGAGCCCCATGGTAGCCAGGTGGGAGAAGGGGAGCGAGGACGCGCCACTTACCCTGCAGAAGATTCCTGACCTACAGA
Seq A exon
GTGAGTGACCAGGTAGTAAAGGGCTTGGAGGGCAGAGGGCTATAGACTGGGGGCAGGGGTTGGAGGATAGAGGAGATGGCTGCCCTGCAACCTTCCCTTAGCTCTTGTTTCCCCCTCAGAGAGATCCTGAGCCATGCACTTGCAGGAGGCCACAAGTCCCAAGCCCTGATTGCTTGGATCCCAAAGCCAGGTGCTCAGGCTTGCAGCCAGAGCTTACCAGAAACAGGAAGGCACACGGTTCACCCCAAGCCAGTTCAACCCCCCCCCCCCCCCAGCAAGAATGAGGGAGAGACAGAGGGAGAAACAGAAGCCCCAGGAACAAGGCCACAGTCCCCAGAATCTGGAAAGCGCTGTACAGAAGGAAGCACCTCTTCGGTGTGCAGGACACTCACGTTTCACTTGTCCTGGAAAAACTTAAGCCCTTGTTTTGGATTCAGTGGGCTGAGTGGCATGCCTGTTCCCCAGAGCTCTCCTTCCTCTGTCTTTCTCCTTAAGCACAGCCGGTCGCTTGCACACTTGCAGGTAAGCTGTGCTTGCCTGTGGCAGAGCTCCTGCCACAGCCTGCCTCTGCATTCAGCATGGTAGGCCCTTTCCAAGCCTCAGCAGGGTTACTTTCTCCCTCATTATAAACTAAAGAGTATGGTCTGGGGCACAAGAAGGAACTTCCAAGCTTCCTGCAATGTCCCTGGCTCTAAGGAATAGATCCTAGGAAGTGTAAAGTAGGCTTCAAGAAGTTGAAGCTCTAAGTAACTTACACTCTTCCTTTCAATGAAAACAAAACATGTCTTTTCAAGAAAAAAAAATTTCAAAAAGACCATTTCAAGGGGTGTTCACAATGAAACAGGAAGATTTAATGGCCTGTGGCACCATTTTACATCCTGAGCAGGTGCTGGCCTTCAATGGGGACTCTTGTTTCCATGAAGAGATTTGCCTGCATTCATTCTAAAATGAATTTTATTGCCAAAATGCCCCTCTACCAGAACGATTAGTGCCTGAATCATAAGATAATGCATACCCATTTATTGCTTTTCAAAGGGGAGATTCCCCCCCCCCCGATTCTTAGAATGCCAATGAGGTAGGGGAAAACCATGCCAGTCAGGTAGAGTTCCCCTGTAATCGCCAACGTTATCTTTTCCGAGGAATGTCGGAGTCATCAGTTTCCGTCAGCAGGCAGGTGCTATAAGATGCTCTGGGGCCTTGAGGCCAGCTCTTCCCTGGCTGCTGGCTGCCGAGGCAGGGCAAAGTGCTCCCTGGGGCTGAGCGGGGAGCCTAGAGCTACTTCTCGGTAGGTTTGTTTCTTTTCTGCGACTGCGTTAGATTTCTCCACTACATATCCTTTTGCTTGTTCTTAAAATAGACTCTCCAGCTGGCTCTATTTTGATCTAAAGAATGGAGCAGAATTGTGTGTGTACCTAAATATCACACCTAAAGTGACATTGGTAGCGCTTGTCTAAGAATAACCTGCACAGCACTGGGGATGTTCAGGAAGTTTAATTACTTGCTACTGGAAGGGCTTTAGTTGCTTGATAATTGGGCTTTTCCTAAATGTCATCAGAAACAGGAGAAACCATAATGCTAAGTTATTCACTTGGACGAGGGTGGCATAAATGAACTTGCTCCAACATATGCAAGTTAAAAGGGAGGTCTAAATATGTATCGATACTGCTTTGTCTCTGAAAACTTGGGATAATATTGCTACACCCAAACTATTTTATGAGTAGTCAATCTGACATTTATAATTTCATATGTAAGATAAGTTCTGGATCTGGCCAAGCAAGCTTTAAATAAATATTATCATGATAAATCATTGAAGCTGACTGTACATAAATGCTGGTAACACTTTTGTAAGATATTTGCATAACTTCTGGTATCATCAAGAGAAAAAAATAACTTATTATGTTTTTAGAATAAGGCTTTGTGAAGGCGCTAATTTAATCATGACTGTCATAGTTCTGCTTTACCTAATCATAAGTACAGAATTACCCAGAAAGGGGCAATCTCAATTGAGGAACTGCCTCCACCAGACTGACCTGTAGGCAGGTCTATGGGGCATTTTATTGACTGGTGATTTATGTTGGAGGTACCAGCCCACTGTGGGCAGCACCATCCTCTAGCAGGTAGGTCTGAGCTGTATAAGAAAGGTAGCTGAGCAAGACCGAGGAAGCAAGCCAATAAACAGAGTTCCTCCACAGTCTCTGCTTTAGTTCCTGCCTTGGCTTCCTACCCTGACTTCCCTCACAAAGACTTGTGGCCTGTAAGATGAAATAAACTCTTTCCTCCCGAAGTTGCTTTTCATCAGTGTTTTACCGAAGCAACAAACAGCAAACAATGACAGAGGTTGGTACTGAGGATGGGGTAAAAACCCCACACTGGCATAAAGGACTTACTCCCAGTTAAAAATTAAAGAGATGAGGTCTAGAGAGGCTGAAAGTTTGTGCTGCCTCACATAGACAGTTGCAGAGTCAAGAGTTTCATCTCCGCTAGTTCTTTCAAAGCTTAGGTCCCTTACTCAGCTGCTTCCACAGCTCTGGTTCAAGTCAGCTAGCCTGGTTCTCACAGTTCTATTTCCTTCCTTCCTTACATCCACACTCAGTGTTCCCTCGACTTCTTGAGTTCTCTATCTGTAGGTTGGAGCTGCCCAGGCATGAAGATACTGGGTGCAGTTGCACCTGCCCTAGACATATGCAGACATTGTTCTAATAATTATTCCCCAAGCAGACAGCACAGTACTACTTCACCATGTATTATGCATACCATGTTAAGTTCAATAAATGATCTGGAGATGGTTTAAAGTACTGAGGATGATATGCACAGATTGCATGCAGACAGTTTGTCATTTCCATGAAGGAATCATGGCTCACAGCTGGGTTTTATATCTATAGGGCGCTCTCGAAACAGGGAGTCCCTGGAAACTGTCTCAGTTTTACTTCCTGTTGCTAGATAGCATGACAAAAACAACTGAGAGGAATCATGGGGAGAAGGTTCAGGAGCTAAGATGCTCTACTCTTGCAGAGGACCCAGTTCCCAGCGCCCAAGTCAGTCAGTCACCATCACATGTAGCTTTTATAGCTCTGGGGAATCTGATTCCTTCTTCTGACCTTGGCAGACGCAATCTCCCAACACACATATATGCACATAAATCTTCTGTGTGGGAAGCAACTAAGTGGAAAAAGGGCTTATTTTAACTAAAAATCAGATTCCAGTTCGTCATGGGGAGGAAGTCACAGAGACAGGAACCTGATACAGCTGGTCACATCATACCTACACTGGAGAAACGGTGCACAGAATACATGGCTGCTTAGCCCACTTTCTCTACTCTTGGTAGAGGCAATCAGCTGCAGAATCAGGGTCTCCCGACTAAGGAATGGTTCCACTTATAGCACACGGTCTTCCTACCTTAACTGATGGAATCATAAAAATCCACCGTAGACACACACACACCAGCCAACTCGATCCAGACAATCCCTCATTGAAACTCTTCTCCCCGTGTGGTTTTAGATGATACAGAATTGATGATTAAAACTAACTGAAAGGCACCAAGAGATCACTATATATTTAGTCTTATGGCACAGGGCAATAGAATATAGTTATTGCATGCGGTAGGAGATTAACACCATACTGTAACAAAAGGATTCTGCTATTGCTTTTTCTGCCTTCTTGACATCAGTCACATCTTCTTTTGTTATTTCTTTAG
Seq C2 exon
GTGGTCCAAAGATGGATGCCATTCACCTTGGCATGTCCAGTGCCCCACTGGTGAAGCATACCAACGGGGTTGGACTCAAGGCCCACAGACCCCGAGTCATGTCAAAGAGTGGGCACAGTAATGTGAGAATCGATAAGGTAGACGGAATCTATTTACTCTACCTCCAGGACTTGTGGACAACCGTCATCGACATGAAGTGGCGATACAAGCTCACCCTATTTGCTGCCACCTTTGTGATGACCTGGTTTCTGTTTGGAGTGGTCTACTATGCCATAGCCTTTATTCATGGTGACTTACAACTTGGGGAATCTAATTCCAACCACACACCCTGCATTATGAAAGTGGACTCTCTCACAGGAGCATTCCTCTTTTCCTTGGAATCTCAGACAACCATTGGCTACGGGGTCCGTTCCATCACAGAGGAGTGTCCCCATGCTATCTTCCTCTTAGTCGCCCAACTGGTCATCACCACATTGATTGAGATCTTCATTACGGGGACCTTTCTGGCTAAAATTGCAAGACCCAAAAAGCGAGCCGAGACCATTAAGTTCAGCCACTGTGCTGTCATCAGCAAGCAGAATGGAAAGCTATGCCTGGTCATCCAGGTGGCCAACATGAGGAAGAGTCTCCTGATTCAGTGCCAGCTCTCTGGAAAACTCCTGCAGACACACGTCACCAAAGAGGGAGAACGCATTCTCCTCAACCAGGCCACTGTCAAATTCCACGTGGACTCCTCTTCCGAGAGTCCCTTCCTCATCCTGCCCATGACCTTCTACCACGTGTTGGATGAGACAAGCCCCCTGCGGGACCTCACACCCCAAAACCTAAAGGAGAAGGAGTTTGAGCTGGTGGTACTTCTCAACGCCACGGTGGAGTCTACCAGCGCCGTCTGCCAGAGCCGAACGTCTTACATCCCGGAGGAGATCTACTGGGGCTTTGAGTTTGTGCCTGTGGTTTCTCTCTCCAAAAATGGAAAGTATGTGGCTGATTTCAGTCAATTTGAGCAGATCAGGAAGAGCCCGGATTGTACCTTCTACTGTGCCGATTCTGAGAAGCAGAAGCTTGAAGAACAGTACAGGCAAGAGGACCAGAGGGAGCGGGAGCTGAGGAGCCTCCTGCTACAGCAGAGCAATGTCTGACTCCACCGGCCTCTGGGCGTCTCCTAACCAGGGCTCCTTTCAAAAGCAATGGCTGCCATGAACGTGGGATGGGTGGCCCCACTACCAAATCACACAGACGTTCGTGGCCATCTTCCCCTTTGTTCTGATGGCTGAACAAGCATTTCTGAATATAAAAAGATGTCTTCAGAGTGCCTGGTCAGAGGTGAGCACTCAAATTCAGATTTCCCCCCACCCCTAAAATGGAGCTATACATTGAAGAACTGAGTGTAGGAAGATGGAGAGAATTCCCGCTGGAGGGCAGACCCAGCAGTGCTGACAGTGGATGGCATGTATGCCTACTCAAGAACATCTGCTCATAATGCAAAATATTTATTTACCCACCTAACAAGGGCATTGGTGGCTGAGGTCTGAGGCGTAATTTGCTATTTGCTCATAGCACTGCTTAAGAACTCACTCCTTCTCATGTTCAAGTGCATACGTTTTTATTTGCAATGACGGTTATCTGGAGATGACAAAAAAAAAAAAAGTTGGGAAAGCAGGGTCTTAAAGCTTGCAGAATAATACAGCCGTTTTATTTTTACATTCTTCCATAGACTTTAATTGTGTGGAGCGAACATCATCAAATCAGGAATCAAGAGTTCAGAAAATATGTCCATCTCTTGATTCTGTGGTCCCCATCACTTCTGGAGGAAGCGTGTACTAGCCTCTTTTTCCTTTAAAATGTCCTTCACAGACAAACCAAATAGCACCATTTAGGGACATATTGGCAACACGCACAGCCGGGTTTCAGCCAGGCTTCCAGAAACCTCAATGTTGCAGGCTCTGAGTAATGTTTGCAATGTCATCTGTCTAGATCCACGTTGGAAAAAAGAGCGTGTGCGTTCCGAGTCCATGTGCCCTCCAGGTCTGCCCTCTGTCAGCGTTATCAGTCGACACATCCATCTCTCAGCTATCTCAGCTTTTCCCTGGGAACATACCTTAGCCACAAAGAAATTGTACAGAGTTACTAGTGTCTTAAGAATTAGACAGTTCCCTGAGAGCTGTGACTGTCACCATTGTGTTAATTCATGGACTGAAGACGGCAGTCACCACAAAAGAAAACTGAAACTGTGTCACAAATAGGAAGTCTGCATTAGATGCTGCAGTTTGCAGCTCATGACACAGAGAAGAGGAGCCAAGGGGGAAAGGTGTCTGTGAGCAAGAAGAGCCCTTGTGCAAGAGCCTAGACAAATACGTAGTACAACTCAGTGTTACAGGGGTAACATTTTACCTCTGAGAAATATAGGAGTATAACGCCTGCATTTCCTTGGGAAAGAGAATTAAGCAGGCTAGGATTGACTGAATAGATAAGCGCTGTGTGCTCATTTTATCTGGACAAACTAGAAATTTACTCAAGTGCCATGTAACCATGAATGTACAGGCAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACATGTTCCTCATACAATATGCCAGGGTGTGCTCTGGCTCTGCAAACACAATACCAGGCATGTGGGATCAGAGGTCACACTAAGAAAGTCTACCAAGTTATCCTCATGCTTATCTGATTCTTTAAGAAAAATGAACATTTGGACCCAGAGAAACTGGGGAGACTTTAGCTGGATCTAGCTGTTAGTGTGAACAACTGCACCCCCAGTCATAACCTTGAGAGACCACTTTCACACTGTCTTTCCTTCAAACAACAACAAAATGTGGAAATAAAATCTTTGGGTTGGAACCAAGCTAATGCAGTGAGAGTCTGAGACCCATGGAGGAAAAGTTTGCAGAACGATTTCTATTAAGGAGGATTTAGGGCTGGAGAAATGGCTCGGTAGGTAAGGGCTACAGCTCAAATGCTCAACACCCTTGTAAAATGCCAGGGAGGGGTTCACAAGCCTAGAACTGCAAGATCATGGGGAGCTGAGACAGGGGGATCACTGGGACTTACTGGGCACCAGAGAGCTCCAGGCTCAGTAAGACACCCTGTCTCAGAAGAATAAGGCAGATAAAGGAAAGTGACCTACTCCTCTGGCCTCTAGGCACATGCATGCTCTCCCCACTCCACATACCAATCTGTCTGTCTGTCTCTGTCTCTCTCCCTGTCTCTTTCTGTCTCTGTCTCTCTCCCTGTCAATCTCTCTCCCTCTCTCCCTTTGTCTCTCCCTCCCTGTCTCTGTCTCTCCCTGCCTCTCCCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAGAGAGAGGTTAAATCATTCAAGAAAATGTTTTCCACTCCTTCCTGACTTCATGGCAGCCTGTGTTAGTTTCCCCCTTTTTCAAACTGTTAGATGTTTGCCCGCTCAGACATTAGTCCCTTTCACTATTAATCTTGTGTATTTGTGTCACATATTACAGTAGAATCAATAGGAAAAATCGTGCCACGAGGGCGTTTGTGGTGGCTTTTCTATTGTTTTATGAAATTCCTCACCCAAAATCCACTTTGGTGGCCATCTGAATCTGATTAATCCCAGTAACTCAGCTTGCTTCTGTTGTATACGGTACAAATGGTAACACGCCAGTCTCAAAATCGTCTTTGTATAATCACTGAGCATATTATATTCATCCAGATTTGGAATATCTGATCATTTGAAAGTTTTTTGTAATACACACCAATATATTCGGTGCCTTCAAAACCACTGTATGGGCCAGGTGTGCTGGTACATGCCTGTGATCCTAGCACATGGGAGGTGGAGGTACCAGGATTAGGAATTCAAGGCCAGCCTCGATGACATAATGCCTCCACGACATGAGCCCCTCTAACAAAATATGTAATGTTTAGGTCAATAAATCATATTGTAACATAATATCTAGTAATTCATTCTATAGTTGACTGGTTTGAAACTTAACATTTTTCAGAATCCCTTAGATATTATTTTGAACCACATATTCTCATGTTAATGTACTAGTAGAAGAATTAAATGATAAGCTTACTGGATGTCATCTAGACAGCTTTCTGATGGCAACAGATTCAGAAGAGTCATCAAAACAATAGAGTGTTTAACCTGAAGAAAGCTTTGTGTTTCTTCAGAAACTCAATGCATTCACTTTCTCTATGATTCTGAAATTGTTCTTCATTTGGGAGACCACAGGGCAGCAGATCAATGTATACCACAAGCCATGTCTTCTGCCTTGCTGCCTGTGACCGCAGACAAAGGAGAGACGCACCTCTGACCCATACAGTGAGCCACTTTGGGTCGAGGGTGGGAGTTAAACCTTGGTTCTCTGTTTTCTTTTTCATGGGGAAATTAACAGTGACGTTTTTTAATATCTAAAAACAAATGCATAGTGGGAAGAAAAAATAATATTCATTAGAGTGGATCAAATATTTAGATAAATGTAAACACCCATTTTGTTTGATCTTTAATTGAATTAAATTTCTACTTTGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609:ENSMUST00000113862:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0100715=IRK=WD(100=88.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types