MmuINT0085810 @ mm9
Intron Retention
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25749802-25753955:+
Coord C1 exon
chr2:25749802-25749982
Coord A exon
chr2:25749983-25753790
Coord C2 exon
chr2:25753791-25753955
Length
3808 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCATTGCTCCCTCTCCACAGTTT
3' ss Score
10.38
Exon sequences
Seq C1 exon
GACCTGTGGGATCCAGCACCTGGAGCGAGCAGGTGGCAACTTGAACCTGCTGACCTCCTTCTACTTCTGCATCGTGACTTTCTCAACTGTGGGCTTCGGTGATGTGACGCCCAAGATCTGGCCATCCCAGCTCCTGGTGGTCATCCTGATCTGTGTCACCCTTGTGGTGCTCCCACTGCAA
Seq A exon
GTGAGTCCTCGTGCTCAGCACAGGGACATCAGGAGGCACTCCCTGAAGAGTGACAAAGGACAGGAGGGATCCATGGTGGCTGTGAGCACTTGTTGGAAGGCCATTCCCAGGAGAGCACTGAGGCCAGAGAAGGTGCTCCCTGGTCTGCGGCGGGTCATAGGTTCTCCCTGGACCCTAGTAAACAGTGAGGTGGTGTTCCGCACAAGAGCAACCATGGGCACAGGCTTTCCTTTCCAGAGGGTCTTAGGTACAAGTGATCCCTTTACCTATGCAGACAGACTGTGGGGATGAAATTTACCCTCTTTCCCAGCCACAGCTTTAGGGATGACTCTGAGCTCTGCCCTTGGGCTAGTCCCATCTCTCGGTGGAGCACTGACCCCAAGCCCAGTAGGCAGCTCCCTACTTCTTCCAGAAGGAGCTGCCTGCCTCTCCACTGCCCCTGTCCAGAGTACGCTGCACTGAGAGCCCGAAGTGTGCTAGTTCCATCCCTTTCCCACCCCCACCATGGTCCCTCCTTCCTTCTCCCACCTGCTATCTTCTCTGTGTCTAGGAGCCAGTCCTAGAGGGTTCTGCTCACAGCTGCTGCTCTGTGATCTTCTTCCTAGCCTTGGTCAAGGGCCCTGCTCTTCTCCAGCTAAGGTTTTAATGAGGTCTAATGTGCCAAACTTCCCCCTTAACATTTTACTCTTACCTAAACAACCATTTCCTCCCTCAGTCACAAGTCTGTTTTCTTGCAAAAGTTTAGGGTCAGCTTCTCACATAGAGGGCCAAGCCCGCCCAGAATGGAGCGTGTATGATAAGATGGAATGGGCCTGACTTGGCCATGCACATCTCTTCATTCCACTCCTGAGGCTCTGCACACGATGCTCTAACTCTCCTGTTCAGAGGCTTCCTAGATCCTCGCTATTCTGTGTAATTCACAGGCCAGGCCTCTGGTAGTATCCACCTGTAATCTCAGCCTTCGGGGGTTCAAGACCAACTCCCCATATGAGGATTTTTATGAAAATCATATTGACACGTGTGCCAAGGAACAGATTGTGGCTTACTAGCCTTTAGCATTTCCTAGCAAGTCTCTGACATTCCTGGGGCTTTGCAAAGTTCTGGAGCTTGCTTATAAACCATGCTGGCCTCAAACTCACAGAGATCCTCCTGCCTCTGTGTCAGGAGTGCTCAGATTAAAGGTGTGTGCCATCACACTTAGCTCAAAAACCTTCACAAGTGTTGTTTTATCCAGAGCGCAAAGCTCTTGTTATGTTTCCTCAGGCCGCCTTGTCTTTTTGTCCTGGGTTGAAACTGCATTTCTTCTTCTGAGCTCTGTCAGTGCTGGTGTGTGCAGTGTGTATCTAGCAAGCTGTACCAAACACTGGTCAGCTTTCATGGGCTGCCCCTGAAGAACGACAGTCTCTCACTCCCTCTTCAGTCTAACCATGAGCCTCTGAGCTGTCACTCTGACCTCCCTGTGACAACCTGTTGAGTTTGGGTAGATGCCTGCCTCTGCTTAAACACCTTCTCCCCCCCAGTTTGGTGGAACCAGAATTTTTTTTAATTAAATACTTTTTATCAGTCCAATAGAGTGATAATACAGGGCTTTTACACATTTAAAAATGAATGCAGTTGACTAATATTACCCATCCTTGAATTCCTGAGAGAAACACGACGTAAGACTTTTGACAGCATTATGCTGGAGTCTGCTGAGGTTTGCTGGATTCTCTTCATTCGTTAAGCTTGTGTCTGAGTGGGGCCTGTGTTTTCCTTTATCTGTCATCACATCTAAGATGGGTCTGCTTTGGTCAGAGTCGCTATGGCTGGAGTGTGCAGGTGTCTCCTGAGACTGCTGGAAGCTGGCCACACACCTGGACTTAGAAACAGACACCGCAGTTATGGAGACCTCAGGCCTGTGGCATGGTTCACAGAGAGCTCTGAAGGCATCAAGTTGGCCCTGACACAGTTTTCGGCCCTCAGCCTCTCTTGGCTTACAGACAAAATTCCAAACTCTGGGCCCTGTGCATGGCCTTCCTCTGTGGCTCACCATCGCTTCCTTCTGCCTGCTTCTCCATTCTTCTAGCTGCACTTGGTACCCATGTCAGCTCATCCTGGTGGGCGTTGATGGTACAGTGACAGCCCAGATTCATCAGTCACAGCTCCAGGTGCTCATCCTGACCTAGCATCATCGAATTGTGTTCTTGACATAAAGTCCACATCATGATCTCTGCAAAGGCTCCATTGATTTTTCCAGATAGCATCGCTTTCTAGGTTCTAGGAAGTCATCTCTTTTGGTAGCCTCCCCTTACACACTATAGGTCCCGTCCTCACTGCAAAGCCATCTGAAGCTTGTCCTGGCCTCTCATCTCATAGCCCCACCAGCTTGTTCACGATATCCTGACTCAGAAGGAGCTTAGACAGTGCCAGGGACAATCCATCCATACAAGTCTCAGCCTTCATTGTCTATCAGGACTCTCTTTGGATTCCCCAGTCTCTTCCCCAAGTGAGGATGAGCCCTATCCCAGTAGCCTCAGAGCCTTCTTGGAGGCTCTGAGATGGGGCCCTGATGCTGAGGGTCACTCTCCTCCACAGAGGCCGCATGTTTAAGATTCAGTATCCAAGCATGTAGGCAATGGCTACTCTGGAGGCCAGGTCAGAATGAAATTCTAGTTGGGCTAGGACTTTGGGGGAGGGGTGGAACTGGGGGTGCTCAAGACCCATTGTCTGATAGTTGGTATCATGGTTGTGGCAGCCTCCTGACCATATGCCCAACCGTATGCCCTGCTCCATATGATCTTGTGGCCCTTGTTCCACCTACAAGCAGCCCATGGATATTGGATTTAGAAGTCACCATAATCTAAGATGACCTCAGGTCAACAAATTACAAACACACACACACACACACACACACACACACACACACACACACAAACACACACACTTTTTTCCAGATCAGCTCCCATCTGGAGATTCTGAACAGACAGTGAGTCTGCTTTAGGACTCAATGTCAGTCCTTCATTAGCTCTATTACCCCCTTCACCACAGCTGCAAACACCCCTACACTTCATGTGAGGAGAGTGAGGCCTGAGAGAGGCTGGAAGCAAGCCCTAGGGATCCAGCAGCCCACTGCAGCAGGCCCGGGTTCCCCAACACGCCCTGCCTACAGGTCTCCTTGTGAGGACCCATGGGAGTGAGATGAAGGTCACATCACCTGTGGAATGGACACAGCCGTCAGGCCCATTGCCACATTCCTAGAAGTAGGCTAGAGATGTGGGGTCTTGATGCTCAACAGTGGAACAGACAGTGGACACCTGACCTCAGATCTACATGTCATGTGAAGCCTTGGGCAGAGCCAGTACTGAGCAGCTCACAGGGGCCAGGTAGATGTGAATCTGGCAGACCTCACAACTCTTCCCACCCAGCACGAGGAAACCCCACTGGCAAGGCCTGAACACTGATCTTGTCACTGTTGATAGAGAGGCACCCAATGTGGATGTCCTAATACTGTCAGGAAAGCCAACAGGGAGAGCCAAGATTCTCATGTCTGTCCAGGAGTCTAGAGCACAGGCTCTGGCATCCGCTACTGGTCATGTAGCTTCTGAGACCACAAGCTGGACTTCCCATGACTGTGTCACACAGCACAGCTTCTGACCCCACCTTATACATGCCAGATCCAGGCCGAGCTTATCCTGCTGCAACCTACCAGCCAAGCAGGCCTGCTCTTACTGTCCTCAGCACCTGGCATCTCCATGTAGCTGCTGTCCCACAGCCTGCCCTGCCCTCTGCTCCCCACCAGAGGCCTGTGCTCATTGCTCCCTCTCCACAG
Seq C2 exon
TTTGAAGAGCTTGTCTACCTCTGGATGGAGCGTCAGAAGTCAGGGGGCAACTATAGCCGCCACCGAGCACGGACGGAGAAGCACGTAGTCCTGTGTGTGAGCTCCCTCAAGATTGATCTCCTCATGGACTTCCTGAATGAGTTCTATGCCCATCCCCGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-Kcnt1:NM_001145403:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=PD(82.3=41.1)
A:
NA
C2:
PF0788511=Ion_trans_2=PD(9.9=14.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: