MmuINT0094980 @ mm9
Intron Retention
Gene
ENSMUSG00000018932 | Map2k3
Description
mitogen-activated protein kinase kinase 3 [Source:MGI Symbol;Acc:MGI:1346868]
Coordinates
chr11:60760613-60763562:+
Coord C1 exon
chr11:60760613-60760690
Coord A exon
chr11:60760691-60763422
Coord C2 exon
chr11:60763423-60763562
Length
2732 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
GACTGCTGTCCCTACTTCAGATC
3' ss Score
8.67
Exon sequences
Seq C1 exon
CCTGAGAGGATCAACCCTGAACTGAATCAGAAGGGCTACAATGTCAAGTCTGATGTCTGGAGCCTCGGCATCACCATG
Seq A exon
GTACGTCTGGGGCTGGGCTCAGCACTTGCTGGCCTGTTGGGATGGATGTCTGTCTGTATAGGGTCTGTGGGTTCCATCAAACATTTCTATATGAGTACAAGGATATCTGGGAGTTGTAGGACCCTTTCCTGACCATCATGATTGTTCTCTGTATCCTGTGATTTCAGCCTTTTCTCTAGAGCCACTGGTGTAGATCAGGAAATCCCAGGCAATGCTAAGCTTAGTTGTTGCCGTGCAAGTAAATCAAGAAGGCAAACTCTTAGCTGGGCATGATGGCACCTTCCTGTGATATGATTCCTATGGTAGCATCCTTTTTAAATGGTTATCCTCAGCTTCATAATAAATTAGAGGGTAGCTTGGCCTTCATGAGACCTTGTCTCAATATCCTTCCCAACACTCAAAAACAAAACAAAAAAAACCAAAACAGTGCCTGGTCCCCCCCTAAATAGGAACCTATTGCTGTAGGTTCCTTTTGTGTTTCTCTAGGTTCAGTAGCATGAGGCTGTAGATCCTGGCTTGTGGAGGCTGAAAGGACCCTTGGTTTGGAGGGAGGAGCAGGGCCCAGACCATTAGGATTGAGTTGGATCAGACAAAGCTAAGTCCAGGTGTGGGGATGGACTTTTTTGCCTTCTAGAACTGCCTGGCCGAGAGCTCCGATGCACCTATTAATGTGATAAAACAATAACCAATGACCAAAAGGGACTTGGGGAGGAAAGGGTTTATTTTGGCTTACAGCTTTCCAGTTGCACCCCTTTACTAAGGGGAATCCGGGCAAGAACTGAAGCAGAAGCCACGAGGAGTGCTACTTCCTGGCTTGCTCAGCCTGCTTTGTTACATTACCCAAGATCACCAGCCCAAAGGTTGGGTTGAGTGTCTATGGTGAGCTGGGGTATCCTACATCAATTGAGAGAATGCACAGGCTTGCCCACAGGCCAGTCTGTGGGGGGGGGGGGGGAACGACACACGGGACACACCTGTTTTCAGTTGAGGCTCCCTTTTCCCAAATGACTTTAGCTTGTGTAGCGTTGACACAAAACTAGCCAGCAAAATGTTACAGTCAAGTTAAACTCTTTGAAGATGGGGACACTTCTGTACTGAACACATGTGAGAAAATGATATAGCAAGAATAGTCTATCTTCCGTTGCAAAGATATTTAACAGAAAGGGACATTCTGACCGTCAGGAGTCACAGTTACCAAGATATGCTGTCCACTTTCTTCGTTCCTCCTGCCTAAATGTTTTGAGACTGTCCAAGTTCCCATGATTGATCTCATGACTATTGGGGAAGACATTTTGTTATTTTTAAAGAGGCTTTATCTTGAAGGCAGGGTTTTACAGTAGGGTTTTCAGGCCCCAGGAACAGGAGCAAGGCTTGGACTGTCTTCTAGGACCTCTTCCTCCAGGTTCACCACTTATGTTTATCCTTGGCCCAACATTTCCACTTAAAATGCTGCAACGGTACGGTTCAGTGCATCCCTCTTGCCCTGGGAGCTCTGGGCACACAAATTTCCTGTGTCTCAGAATACAAGGGAGTTACCTTGCACAGACACAGGTCACACTCTGAACCAAGAAGGCCCTGAGTGGTGTCACCATCTCCACTGCTGTCTCTGACGCTCAGTCATTATAGGGGGCTGGCTCCCGGGGGGTCCTGTGATAGGTAAACTGTCTTATATGTCTTTGTGTTGAGTTAGTTTTTATTTATCTTTTTCTAAACTCTTTAAAAAAAATCATCAGGCTGAGCAGGGTAATGTATACCTTTAATACCAAGAGGCAGAGACAGAGGCAGGTAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTCAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTGGAAAAGCCAAAAACAGACAAGATGTTTGAGGTCCATACTCTGGTGCTTTTTGGTTAGGTATATGGGTGCTACTGAGCTTTCTCTTGCAGTCTGCAGAAAGGTCCTGCAGTAGATTCTGGAAATGCTGCATGCAGTTCTGTCCTGTGGGCGGGCACACATGTGACACACACTGTCTTCCCATTCATGCTGTTCCCACGTTGGTTGGAAAGGCATGGAACCTGACAGGAAAGTCCCTCATCAGAATAGTTTCTAGTGCTCTATGTAGGGCCAGTTGCAGTTGCTATAGAGGTCTCCTCCATTCCTTATGGTGGTCACAGCCTGTCACTGAGGCCTTCCACTGCACCCGTCAGGAGGTATCCATGCAGGAGTCCGCCACTCCCTGTTGGCCTAACTAGTAAAAACAACAGCTGGATAGGTGGCCCTGGATATTGAAGTCTGTGTTGGGGAGGTACTGAAGAGGAAGTAGCTGGGCCAACAGGGGCTTAGGACTGGACCCAGTGAGGTACTTTGATTACTGCCACCTTATGGGAAAGGTGTATGTGGCTGCCACTCCTCATGTTTGACACGCTGTCTGGAACCCAAGTTGTTAAATACAAATCATCCAATTTTAGAGTGTTTGAAAAAAAAATTTAAAAAACCAGTAAGGGTTAAACCCAGCCCAGGGTGAGCCTTAGTCTGAGCTAGGTCTGCCAGTCCAGTCAGAGGAGCTTCAGTAGTTAGTTGGCCTGCTGCTTGGTATGAGGGCAGTCAGTGTCAGCCCTCATACCAAGGCCTGGCCTGGGGTGCTGGGGAATTATGGGTAAAATCCCTTCCTCATCATGCTTCTGGGTACCAAATGAACCTGCTGACTGCTGTCCCTACTTCAG
Seq C2 exon
ATCGAGATGGCCATTCTGCGATTCCCTTATGAGTCTTGGGGCACACCGTTCCAGCAGCTGAAGCAGGTGGTGGAGGAGCCATCCCCACAGCTCCCAGCGGACCAGTTCTCCCCTGAGTTTGTGGACTTCACTAGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018932-Map2k3:NM_008928:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: