MmuINT0096306 @ mm10
Intron Retention
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120388900-120395765:+
Coord C1 exon
chr14:120388900-120389163
Coord A exon
chr14:120389164-120395711
Coord C2 exon
chr14:120395712-120395765
Length
6548 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCGCTGCCTGTTATTAAAAGACT
3' ss Score
2.9
Exon sequences
Seq C1 exon
GTATGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACAGACTGCCGCTTTGCACACCCGGCAGACAGCACCATGATCGACACAAACGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
Seq A exon
GTAAGTGCGCCCGCCGCGCCCGCACTGCTGCGCCTCCCAGGCCGCGGGTGGTGCTTGCGGGTGGGAAGGAGCTGTGCCTCCGGGCAGCTGGGAGACAAGGCTGCCATTCCCGCTGCTCCGCTGCCTAAGCTCTGTCGTCATCCCCCACCCCTTCTTGTTTTGTTCTGTTTTGCCCTTCCTTCCCTTCACAATAACTAAATCCCCAAGGTTCAGGGAACCCAAGCTGTGAGCTCTGTCCCCTCTGCAATCTGGTCTCCAAACCTCCCCCATCCTTACTAGGATCATGGGTCTAGGGCCTTGCAGTGAACCAGGAGACAAAGCAAGTGGTACAGCCCTATGCTACAGTCAGTTAGGGGGGAAAGGGGTAGCCCTCAGAAATGCCCAGCAACCAGTGACCCCGTCGATCACTAGCTTCTCCTCCCCCCATTTCCCCTTGGCTGGGCTGCCTGCCAACAGGTCAGGGCGAGTACAAGCACAGCAGCCACTCAGGAAAGGATGAAATGGAACTGAGCTAGCTGGTGCTAAAACGAACGACCTAGAAGACCTCTAACCCAGGCTAGCCCTTTAACTCTCCTCACTGTCCCTCAGGAACCAATGCTGCTATCTCTCCTGAATCTCACAGCCTCCTCGGCCACAGGAAGCATTGTCATTTTGACCGTCTGGGAGCCTATAAAGACTCCAGAATCTTGTCTCACCTAGAGTCTCGGAATCAGAAGATTTAGGGCCTGGAAAGACAGCTCAGTGGTCAAGTGTGGACAGTCTTTGGGAGGACTGGAGTTGGCTTTCCAGCATCCACATCAGGTGGCTCACAACATCTGTAACTCCAGCTCCAGGGGAGCTGGTCTGGCTCCTAGTAAATGTACATCTTCAGACACAGACACACACATACACATAACATTTAAACGCCCCCCAGGTGTTCTGTATGCACGCTAACATTTGAGAATCACATGCCCAGACCACTCCTCGGGCTCGGTTGTATTCAGGAATCAACTGAAGGGTTTGGGAAGGATCTACCGTTGATGCCTAACCCTATAGCAGCTGGTACAGTGCTATGGTTTGGGAAGGAACCAGGCCCAGGCCCTCTGAATCTTTGGGGCGACTCAACTCCAGTGCACACCCACAGCTGAAAACCAGGGCACTAGGTTGCAGAGATTTTTTTAATGAATTTACTTTAGAAATCTTTACATGTACAGTGGGCACATCACTCGCACCCATTCATAGAAACCACTTAGAGCCTGCCAGCCCTCGGCACCTGCTGGGTGGGGTGAATGAAGGAGGCTGGTTGCTTTGCCCTTCAGGAGCTTGGCATGTAGAGTGTGAGCAACTGTGCTTGTCAGCCACAGCGTGGGAAGCATGGTGGGCTCCAGAGAGAAGGAAGGACACAGAAGCGTACCCTCCCTGGGCAAGAATAGATAGGACTTCAGAGATGAAAGGCACCTGAGAGTGTAGTCTAGGTGCTGGAGAGATGGCTCAGTGCTTATAAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTCTATCCCAAGCACCCACATAGTTCACAACCATCTCTAACTCTGGTATTAGAGCACGCAGCGCCCTCTTCTGGTCTCCACGGGCACTGTAAGTGGTTCAGACAGTCTCCATTCCTGTTCACGTGGGGCCAAATGCATCCACATGAGAGGAAAATAACTCCAATGAAGGGTTTAGCGGAAGTGGAAACCCTAAACCTCAGTATATTTGGGGACAAAGTGGAGGCATGCAAAGATAAAAACACATAAATAATTCAACCTATATGAAAATGAATTATCTTTAGAGAAAATGAGCCCTTTAAGTCTGTGAGTGTAGAGGACTCGGTTTCCATCTACTTAATGAATATCTTATTCGGTGAGAGTCTTCTCTGTGGTTAGTTTTTCAGACCAGCCCCAATTTACTGCTCTTTGTGTTGATTCTTGGCCAGCAAGGTCATGTTCCCACACGACATTCATTGTATAAGCCACACCAGGGACTTAGGGCACTCCCTGGCCTAACCAGGACTCTGCTATTGAGACAGTAGCTTAACTGGCCAAGTTGACTTTTTCTGCATCATGTAACACCTTCAAGGAAGAGAGAAAGACAGGGCTTGGGAATGTTGGGGACGGCTACCAGGTCTGTCTCCCCTTTCTCCCTTCCACCCCCCCTTGGCTTGTCATTTCTACTCTATGAGACCAACATCTCCCCATGACACAGCCATCTGTAGGGATATATTCTTACATCTGATGAGAGAGGAAACAATGTTTCAACAGAGGCTCTGATTAAAGGCGGGGGTGGATCACTGCCATTGTCTTGGTGGCTACATCTCTATGGTCAAAGTGACAGAAGCAGATTACCCTGGGCCACAGTGGCCCAGCTTTAGACACGATGAGCTCTGGAGATGAATCTGGAAACGTTTGTTCCTCTCACCCAAATACCTGTGAAGATTAAAAACACGGTAGTCACCGTGACTATCAAGCTCACCCCCACCTTGTCATGCTATGTTTATACGTCGTCCTCGAAGTCGGAGTTCCAATACACACAGCTAATACCAAATCCAGTCCTGAAGGGGCAGTGTGCAAATCTGTGTCAGTGGTAGGCGACTCAGGGTGGTGGAGATAGGAGCAGAAGTGTCCATTTACCTAAAGCCCCACAGTGTGAAGGCACAGCTGAGCTCTGCCAGGGGCCCTCCTCCACGGTCTCACGTAAGCTCATCAGAATGCAGGAAGATTACTGCAGTAGATGCTGCGAGAGTCAGTTACCATAGTTTCTTGGATTGTTACACTGTGCCCAAATTTGGAGTGCTGAGCAGTCGCAGGATTTCGAAGCATCTTTGGAGGCGACCGAAAGCAATGTAGTTTCAGAACAATGCCAGCGCCTCTGTGACAGTGATGGGAAGATTACCGAATCTGTCATATCTTTCCAGTTAATGTGAGGGGCTCCTTTGAAACCAGCCTTGGTATAGTTTGATGAACCTTACAGGCAAGATTACCCAGAACAGTGCAGAAAGTCTATTATTCTATTTCCTTATTTAGAGGACAAATGGAGAGCTGGGTGCAGCTGAAAATGCTAACATTCCATTCCCCAGACTTCCTGAGCCGAAGACAGAGCGCTTCCATGGTGTAGGTTCTTATTATTGTCCAGGGATCTTCCCCCTGACTTTAAATAGTCAGGCATTACGAAGGAATTTAAAGCTCCGACTCTTGAAAAGAAGAGGCATTTATCTCCATTTGAGCCTTATTCTTTCATAATTCCTCTTAAAATATGAGCATCTCTCTCACGAGAATTTTCCAGACCTAAGAGTAAGCTTGTCGGAGGTGCCCTTTGCTAGTTTTAACACAAAGGGTATTTGATCTTCATGTGTAGTCTTTGTTCACATAAACCAAGATGGATGGCAATGGAAAGAACTGGTAACGGGACAAGCTGCCGTTCGCCAGATAAGTTTCAGTGGTTCTGGAAAACACTCACCGGAACTCCAAGCCCACGCTTCTGTCTGCCTCATTTTATGACCAGTGAGCCAGCACTTCTGATTGTTGCCCCTGGCTCTCCCCACCTCCTCGATCCCCACCTGTGATGCTGGCCTGGACAATTGTTCTCACCTTGACCTGTACTGTGATGGTGCCTCGACTCTGAAAAAGAAATCTCGGCCTCTCATAAAGTCTTATCACTGGTGTCTGTCCATTCAGACCTAGACCATAGAGGATCAGTAAGAGAGACAAGGCTAGCAAGAAAAAAGACCAAGTGTCTGGCGTGCAGTGGGGTTCTGGTTAAATTGCCCTTTCTTGCACTGGTGCCAAACAGGCTCCTAACACACCCGGGACTGCTCTATCCCTAAGGTGAGGTCTGAGCCTGAAGGTGAACAGACATTCTCACCTGGTTCTGTAGCTGTATGCCAGCAAGCCTGTGGTGACATGATTGTCCATGTGTGTGCTTTATGCACATTCTATAAAGCCTTAATATGTATGAAACCCTTCATATTTCAAAACCTCACATGCATCTTAGAAGAAAATTGCATCTAATAAAAGAAATATACTGTGCAGTGGAAAAGGGAGAAATGTCACTATTCTTACTTTACATCAGCTCCTAAGTTACTCTAAAGTGTAAAAGTCAGGTTTTAACAACCTAAAAGAAAAATAAACACAGACCATTAAACATCCAAAAGACTGCCATAAAAAGAAATATTAAACAGTACTTATTCTGCTTGGAAAACTCACTAAAGGATGCTCTGTTGCATCAAAGTTGTGTTCCTGTGTACCAGCCTTAATGGAAGTCAAAAAAAGACCTGTCCACTAGGAAATTTGTTTCCTAGACCCCAAAGGCTGGGAAAGTAGGAAACTGGAGACTGAAAGTTAAGGAGAGAATGATCTCGGCCTCTGCCAGCTGATGAGCATTCCCAGTGAGAGAGTAGCCATGGAGTCTTCAGTGAACTAAGATTAGAGAAGCTCAGAAACCAGAGCAAGCCTGGAAGGGCCCACGGGAGGGTGCGGTGAGCAGTCAGTTGCTGCCTGATGACCCGAGGTCAAGCCCCGGGATCCACATAGTGGGAGGATGACTGTCTCCCACAGGTCATTCTCTGGTGGCCCCACACGTGCCATCTTGCACATGTGTAGAGGTGTACACACACATCAGTCAATGAAATCAAGCCAACCCTGCGTTAGTTAACATTGTGAAACCGTACAGGAAGGAGAGATAACCAGAATTAAGTCGTGGAAGTTTATTGAATTTATATTTAATAATATCCAGGATATCGCACTGTGGTCCATGCTTGTAGTCCTGGCAATCTGGAGGGCTGACGCAGGAGAATTACTGTGAGTTCAAGGCCAATCTGGGCTAAAAAGTGAGGCTTTGTCTCAAAAACAAAAACAAAAAGAAATCTCTAAGAGTTTGGGCTGTTTTTATTTTTAATATTCCTTTTGTTTTTTTGTTTTTTTAATCAGTCCCCAGTATTCAGGGAACGTTATCCAAACTGCTTTCTAGAACATTCTCTTCCCTGTTGGGGATTCCCTGCCTACAGCTCTTTCCACCTTATTTCTAGACTCTTTCTCCAAGTTGCACAGCTCCTAAGCTGTCTTCTCTCACATTTGTTTTTGTTTTGTTTTGTTTTGTTTTGCTTTGTTTTGTTTTTTTATCCTGAGTCATGGAATGATGGGCAACTCTACCTTTGCCAAGGAAAACATCACTGATTGTTCCTGTCTTGAGGGTGAAGCTCCATCTCCCTTCCTTTCAAAGACCTCCGTTCTCCCACGACCTTCAGACTGAATTCTATTGGACAAACCTTGGGGATTTACCTATTGTTCTCATCATAAAGGGGGATGGCCATTGTTCCCATGCGCATTGAAGCTGCTTCCTGGACCTCCTTACTTTCACAGAATCCTATCCTAGAATTGTTTCACCTATGAACAACCAGAAAGAAGAGATTTTTTTTTTTCCATTGAGGTCTAAATCAATCCATAGCCAATACTCTTGGTTGTTTAAATGAAGCCATCTTCCCAGAAGTACTGGTGTAAGTTGAAGGCAGCGCTCTGCCTATCTGAAGGCAGTTCCCTGCTAGTTTAGCTGCTTGTTCTAGAGAAAGTCCCACTTGCCATCAACCGGTTAACCCCTGATCGTAGCTAAAAGTACCGATAGCATTACTAAAGAGAAATGCCTGTAATACCCAACGACGTGACATGCCTTTTGTAGAGGCTACTTTCTTAGTATATACTCTGGTAAGTTGTTTGAAATACATTATAATTTCAAATGTAGTAGAAACAGAACGGATGATAAGTTAGTATTTTGAAATGAAGCACAGTAAAAGTGAAACACTGGGGAAGTTCCTGTTTAAATTCAAATTGTCCAAGGTCTGGAATGTTCACCCACATGCTGAGACCCACCCTACACCCTAGCAGAATGAAGACAGGAACTGAGGCAATTTCCCATGTGATTCAGCCAAAAAATAACGACCCAAACCCAAACCGTTTTGAGTAAATAACCTTGTGTTTGAATATTTTTTGCCTGAATTTTTTTTTTGTCTCAGTTTGCCACTTCATTTTGTTAGGTTAATCTGAATCAAAACAGAGCTAAATGAAGATTTTTTTTTCAAATTGGAATGTACTTGATTTCTTCATTATTTTATATCAGAACTAACTTATCAGATGTTCTTCAGCCCTATGGTCCTTAAAAGTTTTGCATCTCCCCCACCCCCCCCCCACTCCCGAAGCAATATAAAAAAGTGCTTATGGTGTGTATGCAAGCTGCTGTTTTAATTAACTTTCCTGAATTTCAAACATCTATATTTTACTCTCTTATATGCTTTTAACTAAGGTATAGTAGATGCATTTTTTGCTTCGATACTAATTTAAGGTGTAATATTCATTTCTTTAGAGAACATTTTTGTTGTTGTGCATGCCTAGTGTTTTGTACGTTGTATATTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCGCTGCCTGTTATTAAAAG
Seq C2 exon
ACTCAGTCGACTGCCAAAGCACTGAAGCGACCTCTCGAAGCAACTGTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139:ENSMUST00000088419:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.210 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types