RnoINT0090152 @ rn6
Intron Retention
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105756930-105763475:+
Coord C1 exon
chr15:105756930-105757049
Coord A exon
chr15:105757050-105763421
Coord C2 exon
chr15:105763422-105763475
Length
6372 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCGCTGCCTGTTATTAAAAGACT
3' ss Score
2.9
Exon sequences
Seq C1 exon
GAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
Seq A exon
GTAAGTGCGCCGGCCCTGCCCGCACCGCTGCGCCTCCCATGCCGCGGGTGGTGCTTGCGGGTGGGAAGGAGCTGTGCCTCGGACAGCTGGGAGACAAGGCTGCCATTCCCGCTGCTCCGCTGCCTAAGCTCTGTTGTCATCCCCCACCCCTTCTTGTTTTGTTCTGTTTTGCCCTTCCTTCCCTTCACAATAACTAAATCCCCAAGGTGCAGGGAACCCAGGATGTGGGAACTCTGTCCCCTCTGCAATCTGGCCTCTGAGCCTCCCCAATCATTACTGGCATCCTGGGCCTTGAAGTGAACCCGAAGACTGGCAGGAACTCAGGAGAGCGGACAAAGCAAGTGATACAGCCTACTGCTGAAGTCAGTCCCTGGGGTGACCCTCAGAAATGCACAGCAACTAGTGACCCTGTCATTTGGTAGCTTCTCCTCCCACTGCCCCCTGACTGTGCTGCCTGCCAACAGCTCCAGAGATTTCAAGCACAGCAGCAACTCAGTAAAGGATGAAAATGGAATTGGGCTAGCTGGCGCTAAAAAAAAATGAACTAAAAGACATATAGCCCAGGCTAGCTAGCCCTTTAATTCTCCTCACTGTCCCTCGGGAACCAATTCTGCTCCAGAATCTCACAGCCTCCAGCTGCCCCTTGGCCACAGGAATCATTGTCATTTTGACCTCCTAGGAGCCTATGAGGACTCCTGAATCTTAAGGCTCACCCAGAGTCTCAGGATCAGAAGTTTAATTTTTAAAAAATAAATACCCTGTTAGGGACTGGAACGATAGCTCAGTGGTTAAGTGTGGACAGTCTTTGGGAGGACTGCAGTTGGCATCCATCACCACCCATATCAGGTGCTCACAATAGCTGTACTCCAGCTCCAGGGGGATCCGACTCTTAGCAAATGCAGACACAGACACACACATACACATAACATTTGAAACCTCATAGGTGTTTGGCATGCACGTTGACGTTTGAGAATCACGTATCCAAACTGCCCCTCAAGTTTGGCTACATTTAGGAATCAACTGAATGGTTTGGGAAGGATCTACCATCGATGCCTAACCCCAAAGCAGCTCGGCGAAGTGCACCAGGCCCAGGCCCTCTGAATCTTCAGGGCAACCCGAGTGCACAGCAAACAGCTGAGAGCCAGGGCGCTAGGCTGCAGACATTTCTAATGAGTTTACTTTAAAGCAAGACATCCCGCTCATCAGAAGTCTTTAAATGTACAGTGGGCACATCACATCCACTCACAGAACCCATTTAGGGCCTGCCAGCCCTCAAGCACCCGCTGGGTGGAGTGAATGGATGAGGCTGGTTGCTTTGCCCTCCAAGAGTAAACAACTGTGCTTGTCAGCACGGACACAGTGTGGTGGGCTCAGGGGAGAAGGAAGGACACCGAGGCCAATCCTCCGGAGACAGGACTTCAGAGATGGAAGGGACCTAAAAGCATAGTCTAGGTGCTGGAGAAATGGCTCAGTGGTTAAGACCACTGGCTGCTCTTCCAGAGGACCCAAGTTCTATTCCTAGCACCCATGTGATTCACAACCATCTCTAATTCTGGTACTCGGGCACCCAGAGCCCTCTTCTGTTCTCCATGGGCACCGCACGTGGTTCAGACTGTATCTCTCTAGTGTCTTGGGTCCTTTCTAAGTTTTCAGGCAGTACACTGAGCCTCTCCATTCCTGTACACATGGAGCCAAATTCATTTTATAAGCCACACTAGGAACTTAGGGCACTTCCTGACCTAACCAGGACTCTGCTATTGAGACGATAGCTTAACTGGCCAAGTTGACTTTTGTGTATCATAACACTTTCAAGAAAGAGAGAAAGACAGGGCTTGGGACCTGTTGGGGACTGTTACCAGGCCTGTCTCCCCTTTCTCCCTTCCATCCCCCTTGGCACGTCATTTCTACTCTCATAGGCCAACCTCTCCCCATGGCACAGTGATCTGTAGGGACACATTCTTACACCTGATGAGAGAGAAAACAATGTTTTCAACAAAGGCTCTAATTAAGAGGGAAAATCATTGCCAGTTGTCACCTTCATGGCTATATCTGGACGGTCAAAGTGATAGGAACCGATTACCCTGGGTCACAGCGGCCGTCTTTCAGCCTGAGACGTGATTAGCTCTGGAGATGAGTAAGGAAACATTTGTCCCTCTCACTCAAATATCTGTGGAGATTAAAATCACGGTAGTCACGGCGACTGTCGTGCTCAGCCCTGACTTTGTCATGCTGTGGTTATACGTGCTAGAAGTCGGAGTTCCAATGCACACAATCAATACCAAATCCAGTCCTGACGGGGCAGTGTGCAGAATCTATGTCCATGGTAGGCAACTCGGGGTGGTAGAGACCTGAGCAGAAGTGTCCGTTTACCCAAAGCCTCACAGTATGAGGCTGCAGCGAGCGAGCTCTGCCACAGGCCCTCCTCCACATTCTCACGTAAGCTCATCAGAATGCAGGGGGGTTACTGCAGTGGTGCTGCGAGAGTCAGTTACCATAGTTTCTTGGATTGTTACACTGTGCCCAAATTTGGAGTGCTGAGCAGTCACGGGATTTCGGAGGCGACGGAAATCGATGTAGTTTCAGAACAATGCCAGCACCTTTGTGACAGTGATGGGAAGATTGCTGAACCTGTCATGTCTTTCTAGTTAATGGGAGGGGCTCATTTGAAAACCAGCCTAGGTACAGTTTGATGAATCTTACAGTCAAGATTACACAGAACACCAGCAGAAAGACTATTATCCTATTTCCTTATTTAGAGGGACGGATGGAGAACTGGGTGCAGCTGAAAATGTTAACATCTGCTCATCTGACTTCCTTAGCCAAGGACAGCACACTTCTATGATGTAGGTTCTTGTTATTGTCCAGGGACTTCCCACCTTACTTTAGACAGTCAGGCATTAAGAAAGAATTTAAAGCTCCGACTCTTGAAAAGAAGAAGCATTTGTCTCCATTTGAGCCTTATTCTCTCATAACACCTCTTAAAATACGAGCATCTCTCAGGAGAAGTTTTCAGAGGTGAGAATGAGTGCCTCGGAGCTGCGCCCTTCGTTGGCTTTAACACAAAGGGCGTTTGATCTTCACGTGCACTCTCTGTTCACATAAACCAAGATGGAACTGGTTTGTGAAAGGAAATGGGACTGGCTGCTGTCTGCCACAGAAGTGTCCATTGTTCCGGAAAGCACTCACCGGAACTCCGAGCGCACGCTTCTGCCTGCCTCCCTTTATGACCGTAAACCAGCACTTCTGATTGTTTCCCCTGGCTCCCCTGACCTCTCCGTCCTCGCCTCTGATGCTGGCCTGGATGGTTGTTCTCACCTTGACCTGCAGTGTGACGGTGCCTTGACTGTGAAAAAGAGATCTCAGCCTCTCGTAGAGTCACTTCTGTCCATCCACTCAGACCGAGGCCTCAGAGGACCAGTGAAGGAGAAAAGACCAGCAAGAAACAAGACCAAGTATCTGGCATGCAGTGGAGCTACGGTTAAATTGCCAAACAGACTCCTAACACACACACACAAAACACAAACACACACACACACACACACACACACACACACACACACACACACACCACACACGGGGCTGCTCAGGTTTGGTCGCTCTCTGTGGGTGAACATTCGGTGCAGACATTCTCACCTGTGGTGGTAGCTGTGTGCCAGCAAGCCTGTGGTGACACCTATACAGACTTCTTTAAAATAGTCTCTGTGTGTGCCGGATGTAATTAAAATGCTTAATATGTATGTATATGTATTAAATACATACGTGTATTATGTATGAAACCCTTCATACTTGAAAACCTCAATGCATCTTAGAAGAAAACTGCATCTAATGATAGAAATATACCGTGCAGTGGGAAAGGGAGAAATGTCGCTGTTCTCACTTTACCCTAGCTTCCTGAGTCACTCTAAAGTGTAAAAATTAGGTTTTGACAACCTAAAAGAAAACCCAGACCATTAGGCATCCATATGACAGCCGTAAAAAGGGATTCTTAGCATTACTTACCCTGCCTGGAGAACTCACTGAAGGATGCTCTGTTGTATCAAAGCTGTGTTCCCTCCCGTGTACCAGCCTTTGAGACTCTTCCAGAAGGCAAGTCAGAAAAGACCCACCCATCAGGAAATTCGTTTCCAAAATCCCAAGGGCTGGAAAAGTGGGAGACTTGAGACCGAAAGTTAAGGACAGACTTTGGACTCTGCCACCTGATGAGCATTCTGGGTACTCTGCGAGAGCAGCCGTGGAGCCCTCTTCAGTGAACCACGACTAGCTGGGGCTCAAAAAACACAAGCCTGTGAGGGCCAACGGGAAGGCCCAGTGATCAGCCATTTACTCCTGATGACCCCAGGTCAATCCCTGGGACCCACAGCTTGCAAGGCTGACTGTCTCCCCTAGTCATCCTCTATCGGCCACATACCTGCCACCTTGCCTATGTGTAGCTGTGCGCACACACACACACACACACACACACACACACACACACACACACACACAGTAAAGCAGACCCTGCATCAGTTAACACTGTGAAGCTGTACAGGGAGGAAAGATTTAAGTGGAATCATGGAAGTTTATTGAACTTACATTTAATAATATCCAGGAGTTGCTTGGCACTGTGGCTCATGCTTGTAATCCTAGCATTCTGGAGGGCTGGTGCAGGAGAATTGCTGTGAGTTCAAGGCCAGTCTGGACTAAAAAGTGAGACTGTCTCAAAAACAAAAGAGTTTGGGGCTGTTTTTGTTTTCAATATTCCGTTTTCTTTGCTCAATCTATCATTCGATGACCTTTATCCAAGCTGCCTTCTAGAGCATTCTATTCCCTGTTGGGGATTCTCTGCCTGCAGTTCCTTTCACCTTACTTCTAGTCTCTTTCTCAAAGTTCCATCGCTCCCAAGCTATCTTCTCTCACCTTTTTAAAATCCGGAATCATGGGATGCTGAGCCAAGGAGAATGGCATTAATTGTTCCCACCTTGAGGGCAAAGCACCATCTCCTTTCGATTCCAACAGCATCATTCTCCCACAGAACTTCAGACTGAATTTTATCAGACAAACCTTGGGGATTTACCTATTGTGCTAACCATAAAGGGGGATGGTCATTGTTCCCGTTTGCACTGAAGCTGCTTCCTGGGCTTCTGTATTCTCACAGGATCCAAGCATAGACTCTCCCCACTTTTTAACAGCCAGAAAGAAGAGGTTTTTTTGTTTTTTGGTTTTTGTTTTTGTTTTTTCCATTGAGGTCTAAATCCATATCCAATACTACCTTGGTTGTTTAAATGAAGCTATCTTCCCAGAAGTACGGTTGTAAGCTGAAGGCAGCGTTCCGCTTGTCTGAAGGCAGCGTTCTGCTTGTCTGAAGGCCATTCAGTCCCTGCTATTTTAGCTGCTTGTTCTAGTGAAAGCCCCACTTGTCACCAACCTGATAACCCCTGATCGTAGCTAAAAGTACAGATAGTATTGCTAAAGAGAAATCATTTTAATACCCAAGGATGTGAAATGCCTTTTTAAAGGGTATTTTCTTAGAATAATCCGGTAAGTTGTTTGAAATAAATTATCATTTCAAATGTAGCAGAAACAGAACGGATGATAAGTTAGTTATTTAGAAATGAAGCAGAGTAAAAGTGAACGGTTGGGAAAGTTCCTGTTTAAATTCAAATTAATTGTCTGAGGTCTGGGACCTTCACCCACATGCTGAGACCCACCCTAGCAGAATGAAGACAGGAACTGAGGCAATTTCCCGTGTGATTCAGCCAAAAAATAACGACCCAAACCCAAACAGTTTTTTTGCGTAAATAACCTTGTGTTTGAATATTTTTTGCCTGAATTTTTTTGGCTCAGTTTGCCACTTCATTTTGTTAGGTTCATCTGAATCAAAGCATAGCTAAATGAAGATTTTTTTTCAATTGGGATGCACTTGATTTCTTTATATAACTTGATTATGTTATATCGGAACTAACTTATCAGATGTTCTTCTGCCCTACGGTCCTTAAAAGTTTTGCATCCCCCCTCCCCGCCCCCTGAAGCAATAAAAAAAAAAAAGTGCTTATGGTGTGTATGCAAGCTGCTGTTTTAATTAACTTTCCTGAATTTCAAACATCTATATTTTACTCTCTTATATGCTTTTAACTAAGGTACAGTAGATGCATTTTTTGCTTCGATACTAATTTAAGGTGTAATATTCATTTCTTTAGAGAACATTTTTGTTGTTGTGCATGCCTAGTGTTTTGTACGTTGTATATTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCGCTGCCTGTTATTAAAAG
Seq C2 exon
ACTCAGTCGACTGCCAAAGCACTGAAGCGACCTCTCGAAGCAACTGTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737:ENSRNOT00000014300:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]