Special

GgaINT0123095 @ galGal4

Intron Retention

Gene
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144598195-144602663:-
Coord C1 exon
chr1:144602400-144602663
Coord A exon
chr1:144598249-144602399
Coord C2 exon
chr1:144598195-144598248
Length
4151 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCGCTGCCTGTTATTAAAAGACT
3' ss Score
2.9
Exon sequences
Seq C1 exon
GTGTGCAGGGAGTTCCAGAGGGGAAACTGTGCGCGTGGAGAGACTGATTGCCGCTTTGCACATCCGGCAGACAGCACAATGATTGACACAAACGACAACACCGTAACCGTGTGTATGGATTACATAAAAGGTCGTTGCATGAGGGAGAAATGCAAGTATTTTCACCCTCCTGCACATTTGCAGGCCAAAATCAAAGCGGCGCAACATCAAGCTAACCAGGCTGCAGTGGCAGCCCAGGCAGCTGCGGCAGCTGCGACTGTGATG
Seq A exon
GTAAGTGCTGGCATATATGGCTGCTTTTCTTGACAGAAGCTCTTTGATGCCTATTTTGCTTCGATATAATGCTATTTGCTTATACTTTATTTTCCCTTTTGCTATTTTTTTCTTTTTTTTCTTTTTTTTTGGTAAAAGATAAGAATTTTTAAAATTACTACTGTTGCTTGATGGGAGGAAGCACTCTTTTTCATTATTCTCTTATTTTAATGCTGTATTTCTATCCAAGACAGTGAAGCAAATGACACTCTATACCACTTCTGTTCTCTGCCTTGATTATGTGTTAAATTTGCCCCTAGTATTTCCAAACAGAAATAAAACTGTTCAGTGTCCCCTGGAAAATAGGGGTCGATACGCTGGTTTAACTCTCTGACAACAGTTAGACATGTGGAAATGTGGAAGAAAAGTAAGAAAAGCAAAGAGGTGGTTTTTGCTTCAGGTTAGTACTAGAAGTGAAACATGTTAAGATTCAGTTCACCCCACTTTAAATGCCCTTCAGTTAAGTAGAGCCTAACCCAGCCACCTTCGTTTCACTCTATGGACAGTGGAGAAAACCCAGCACGTTCATCTACACTGTTTATCTGATTCATCACCATTGGTGCCTGTCTGAGGGGGAGGAAGAATTATCCTCTGGAGATAGATGGCTTTCCTCACTGCCTAAGAAATGCTGACTGTATCTTCTTGAACTTTGGCTAAGGCCAATGAGTCTCATACTAAGAGGCCTTTCTTTCCCCTCCTACTGACAGGGCAAGTCCATTGAATCTCTGTGCTACCATTTTTTTTTATTTTAGCACAACAGGGTTTAAAAGTAGTAAACCAAAATGGGAATAATTAAGAAAAAGCAGAGTAAGTTTGGTCATAATTTCTATTTTCAGAAATTTGAAAGCTGTTCGAACAAGGCAGCCCATCCATTTACCAATGTTGGTTATCTCTTATGGTTGCTACCAGGAAAGTTGTTAAATTTAAAGAAGTGGTATTGATACAGTTAAAGAAATCAAGCGTGCAGGATTTGACTTGGGAGACAAAACTGCTGGCAGAAAATCAAAGAATCGTTGTCCTCATTGCTGGCGCTGGGTGAATAATTAAGCAGATGCAGTTTGTGGACTTGTGGGCAGTGCATACAATAGTTATAGACAATATAGTTATTCTTTGAGTAAGGAGCCTACCAGAACCACAATACAATACAGTATATAACTACCCCATGCTATTGTATTTAGCAAATTAGCAAAGAGCAGACTTTCTGAGGAACAAAGGGTAAGTTATGCAAGTAAATAAATCTCTAACAGAAGAAAAATTTTAGTTTTTTTTTTTTGCACTTCAGTAATGGTTGGGCATATATCCTGTCATTTTAAATAAACCATGTTAGCCTTGAAGCGAGATGAGGAATCTTTGGGAACACCAAATTGAAATTCTAATGTCACAAGGGAAGAAGTCTGGGAGCTATAATTCTAGGTAACTTTTTACAGAAAAATATAGAAAATACTTTAATATTTAGGCTATCAAACAGAAGAGGTTATTTTCAATCTAACTATTTTTTACTTAACGTAGATTTGAAAGAATAAGATAAAGTGAATGAAAAATCACCAGAATGACAACAGCAACAAAAAAGTGGTAGAAAAGATGCACTCCTGCAAGCTACCCAAGAATGAACAAGAAAAAGCAGTTGGATCTAGAGATCAAACGTAAAGCAGTAATACAAACACTTACCTGTAGGGCTCACTTAGAGGTTGTTGCCAGGTTGAATTGTAAGAGGTCTTCCTTCCTGAGGGAAATATCTGCACTGCTTTGGCCCAGAGGGTTTTTTTTCTAGGCAAGCGTTGTGGACTTTATTGTAGTAGACATTGTATTGTAGGAGACATTGTAGTTAGACCTTGGAGGACCATTGAAGGTCAATGGAGACTACCATCTGGGACCATAAAATGCCCTGCCTGTATTTTCATACACTAACAATCAGGAACATTTACTCAGATGTCCTAAGTGACCTCATACTTTGAAGTAAAAAGAAAGGGGAAAAACACTGAATAAGGTACGAACCATATATAGCTTATATCCTAAATACATTAGAAGACAGTCAGCGGTCATTATATTCAGGGAGCCCCAGCTATTCATGTACTGCATCAAAAAACATAGAAAGTCACAGAGGAATGTACAGACACCTAAACTAAAATGTGAATTGATAGTTGAGATTGGAAGGGACCTTGAGATTGTCTAGTCTACCTCCCTGCTCTGGTTGGATGGCTCAAGCAGACAGCCCAGGATTGTGCCTGGTTGGCTTTTGAATTTCTCCAAGAATAGAGACTCCATAACTTCTCTAATGCCTCTAGGTTAAACTTTGTCTGGAAGGCAAAAGGAAAGCCAGCAAATACTTCCAAGTGGGGAGGTAAGGGTCAGAAGACCGTAGAGAGGATGTGGAGAAAGGTAGTCATTACAGAGATAACGAGTGAGGACAAATAATACAGGTACTGGATTATAGAGGCAATTAACTGAAATGCTTCACTCTTATTGATGTTGGTTTAAATTTATGGGCTTCGTCATCACATAATGCTGAATTCAGTTGTAATACTTAACCTACACATAGACTTCCATCAGTGGTGGATGCAGAGGGTCTGAGGTTCTGTTAGCGTAGCCAAGGTACCATAACATCAGCTGCGCAGCACTCTGTGTGAATGCAGGAAGGCTATCCACATCCTCACACTGCACCAGATGTTTTTTCTTATAGCTGAGTCTTGACCCTCTTTTTCTTATAGTTGAGTCAGACTACACATCAGGGAAAATAATCCAGAAGTGTGCTGCAGGATAGATGGGGAGTATGCTGGGAAGCCTCATGCAAGGTAGCTGCAAAAGGACTGGGAACGAAGACAGCAAAGGCTGTCCTGCAAAATACCCTGTTGGCGTTAGCTAATACCATGACTACAAGCTGTTCGTAAGGCATTTTGTACCTTGTCCTCTTTTTTAGACTTTTGTTCCCTATTTCCACATACTGATGTCAAGAGAGACATAATCTGCGTATCTGGAAAGAAAGGTTAAATATCAGTGAATGCTTTGAAAAAAAAAAGGGGAAAATTCTGATTTATGAGTAAATCATCCTTGCTGTCTAAAGGTTTGCAAGAATAATTTACAGTACAAAATTTGAAAGAAATATGTGATCTTTTTTTTTTTTTTTTAAAAGAATATCATCATATCAACCACAGGTTTAATCTTACAGTGAAAATATACAACAATATATATGTCTATGTACTATGCCTACATATTTTCTTTAAAATTTTTATGATGCTAAACCGGTATTATGAGTCATATTTCAGTGTTTAATACTGCTAGGAGCGGTATTTTTACTCCCTGCTCCCAAAGCTGGTACTGTAAGTCGTAGTGAAATTTAGAGAACGTGTTTCAAATTCTGATAGGCTGTTGGTTTTTTTCCTCACAATGTAATGTGGTAAGTTGCAAGGGAAAAAAAAAAACAAACAAACTACAAAAATGACCCGCCTTTAGGGAAATCTATAAGGAATTAATGATAAGTTAGTGCAACGGGACGTGTTATCTATTCCGCATTGGAAAAGGAGAACCTGTCTCATTTGGAACCCCAGATCTGTTGGGTTACGCACTTCTGTTGCCTAAGCCCCTCTCCTTGGAAGCACGAATATTGGGAGCGCTTGTGATGCGTTACGTCTTTCAGTAGTGCTTTTGATTGGGACGTGCAGCATTCCAAATTGAATTGCACACTTGGGAATCTGGTTTGGCTAACTTATCAGAAATTCTTGTAGGAGTATCCTTAAAACTTTCCGCATCTCTGTGAAGTGTTGATAAAATGCTTTATAGTGTCTGCAAGCTGCTGTTTTACTCAACTTTCCTGAATTTCAAACATCTATATTTTACTCTCTTATATGCTTTTAACTAAGGTATAGTAGATGCATTTTTGCTTCAGTACTAATTCGAAATGTAATATTCATTTCTTTAGAAGACATTTTTGTTGTTGTGCATGCCTAGTGTTTTGTATGTTGTATATTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCGCTGCCTGTTATTAAAAG
Seq C2 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000042993:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (disopred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0064219=zf-CCCH=PD(81.5=25.0)
A:
NA
C2:
PF0273412=Dak2=PD(18.0=88.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Annotated function
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]