GgaINT0123095 @ galGal3
Intron Retention
Gene
ENSGALG00000016890 | A3F958_CHICK
Description
NA
Coordinates
chr1:149566861-149571329:-
Coord C1 exon
chr1:149571066-149571329
Coord A exon
chr1:149566915-149571065
Coord C2 exon
chr1:149566861-149566914
Length
4151 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCGCTGCCTGTTATTAAAAGACT
3' ss Score
2.9
Exon sequences
Seq C1 exon
GTGTGCAGGGAGTTCCAGAGGGGAAACTGTGCGCGTGGAGAGACTGATTGCCGCTTTGCACATCCGGCAGACAGCACAATGATTGACACAAACGACAACACCGTAACCGTGTGTATGGATTACATAAAAGGTCGTTGCATGAGGGAGAAATGCAAGTATTTTCACCCTCCTGCACATTTGCAGGCCAAAATCAAAGCGGCGCAACATCAAGCTAACCAGGCTGCAGTGGCAGCCCAGGCAGCTGCGGCAGCTGCGACTGTGATG
Seq A exon
GTAAGTGCTGGCATATATGGCTGCTTTTCTTGACAGAAGCTCTTTGATGCCTATTTTGCTTCGATATAATGCTATTTGCTTATACTTTATTTTCCCTTTTGCTATTTTTTTCTTTTTTTTCTTTTTTTTTGGTAAAAGATAAGAATTTTTAAAATTACTACTGTTGCTTGATGGGAGGAAGCACTCTTTTTCATTATTCTCTTATTTTAATGCTGTATTTCTATCCAAGACAGTGAAGCAAATGACACTCTATACCACTTCTGTTCTCTGCCTTGATTATGTGTTAAATTTGCCCCTAGTATTTCCAAACAGAAATAAAACTGTTCAGTGTCCCCTGGAAAATAGGGGTCGATACGCTGGTTTAACTCTCTGACAACAGTTAGACATGTGGAAATGTGGAAGAAAAGTAAGAAAAGCAAAGAGGTGGTTTTTGCTTCAGGTTAGTACTAGAAGTGAAACATGTTAAGATTCAGTTCACCCCACTTTAAATGCCCTTCAGTTAAGTAGAGCCTAACCCAGCCACCTTCGTTTCACTCTATGGACAGTGGAGAAAACCCAGCACGTTCATCTACACTGTTTATCTGATTCATCACCATTGGTGCCTGTCTGAGGGGGAGGAAGAATTATCCTCTGGAGATAGATGGCTTTCCTCACTGCCTAAGAAATGCTGACTGTATCTTCTTGAACTTTGGCTAAGGCCAATGAGTCTCATACTAAGAGGCCTTTCTTTCCCCTCCTACTGACAGGGCAAGTCCATTGAATCTCTGTGCTACCATTTTTTTTTATTTTAGCACAACAGGGTTTAAAAGTAGTAAACCAAAATGGGAATAATTAAGAAAAAGCAGAGTAAGTTTGGTCATAATTTCTATTTTCAGAAATTTGAAAGCTGTTCGAACAAGGCAGCCCATCCATTTACCAATGTTGGTTATCTCTTATGGTTGCTACCAGGAAAGTTGTTAAATTTAAAGAAGTGGTATTGATACAGTTAAAGAAATCAAGCGTGCAGGATTTGACTTGGGAGACAAAACTGCTGGCAGAAAATCAAAGAATCGTTGTCCTCATTGCTGGCGCTGGGTGAATAATTAAGCAGATGCAGTTTGTGGACTTGTGGGCAGTGCATACAATAGTTATAGACAATATAGTTATTCTTTGAGTAAGGAGCCTACCAGAACCACAATACAATACAGTATATAACTACCCCATGCTATTGTATTTAGCAAATTAGCAAAGAGCAGACTTTCTGAGGAACAAAGGGTAAGTTATGCAAGTAAATAAATCTCTAACAGAAGAAAAATTTTAGTTTTTTTTTTTTGCACTTCAGTAATGGTTGGGCATATATCCTGTCATTTTAAATAAACCATGTTAGCCTTGAAGCGAGATGAGGAATCTTTGGGAACACCAAATTGAAATTCTAATGTCACAAGGGAAGAAGTCTGGGAGCTATAATTCTAGGTAACTTTTTACAGAAAAATATAGAAAATACTTTAATATTTAGGCTATCAAACAGAAGAGGTTATTTTCAATCTAACTATTTTTTACTTAACGTAGATTTGAAAGAATAAGATAAAGTGAATGAAAAATCACCAGAATGACAACAGCAACAAAAAAGTGGTAGAAAAGATGCACTCCTGCAAGCTACCCAAGAATGAACAAGAAAAAGCAGTTGGATCTAGAGATCAAACGTAAAGCAGTAATACAAACACTTACCTGTAGGGCTCACTTAGAGGTTGTTGCCAGGTTGAATTGTAAGAGGTCTTCCTTCCTGAGGGAAATATCTGCACTGCTTTGGCCCAGAGGGTTTTTTTTCTAGGCAAGCGTTGTGGACTTTATTGTAGTAGACATTGTATTGTAGGAGACATTGTAGTTAGACCTTGGAGGACCATTGAAGGTCAATGGAGACTACCATCTGGGACCATAAAATGCCCTGCCTGTATTTTCATACACTAACAATCAGGAACATTTACTCAGATGTCCTAAGTGACCTCATACTTTGAAGTAAAAAGAAAGGGGAAAAACACTGAATAAGGTACGAACCATATATAGCTTATATCCTAAATACATTAGAAGACAGTCAGCGGTCATTATATTCAGGGAGCCCCAGCTATTCATGTACTGCATCAAAAAACATAGAAAGTCACAGAGGAATGTACAGACACCTAAACTAAAATGTGAATTGATAGTTGAGATTGGAAGGGACCTTGAGATTGTCTAGTCTACCTCCCTGCTCTGGTTGGATGGCTCAAGCAGACAGCCCAGGATTGTGCCTGGTTGGCTTTTGAATTTCTCCAAGAATAGAGACTCCATAACTTCTCTAATGCCTCTAGGTTAAACTTTGTCTGGAAGGCAAAAGGAAAGCCAGCAAATACTTCCAAGTGGGGAGGTAAGGGTCAGAAGACCGTAGAGAGGATGTGGAGAAAGGTAGTCATTACAGAGATAACGAGTGAGGACAAATAATACAGGTACTGGATTATAGAGGCAATTAACTGAAATGCTTCACTCTTATTGATGTTGGTTTAAATTTATGGGCTTCGTCATCACATAATGCTGAATTCAGTTGTAATACTTAACCTACACATAGACTTCCATCAGTGGTGGATGCAGAGGGTCTGAGGTTCTGTTAGCGTAGCCAAGGTACCATAACATCAGCTGCGCAGCACTCTGTGTGAATGCAGGAAGGCTATCCACATCCTCACACTGCACCAGATGTTTTTTCTTATAGCTGAGTCTTGACCCTCTTTTTCTTATAGTTGAGTCAGACTACACATCAGGGAAAATAATCCAGAAGTGTGCTGCAGGATAGATGGGGAGTATGCTGGGAAGCCTCATGCAAGGTAGCTGCAAAAGGACTGGGAACGAAGACAGCAAAGGCTGTCCTGCAAAATACCCTGTTGGCGTTAGCTAATACCATGACTACAAGCTGTTCGTAAGGCATTTTGTACCTTGTCCTCTTTTTTAGACTTTTGTTCCCTATTTCCACATACTGATGTCAAGAGAGACATAATCTGCGTATCTGGAAAGAAAGGTTAAATATCAGTGAATGCTTTGAAAAAAAAAAGGGGAAAATTCTGATTTATGAGTAAATCATCCTTGCTGTCTAAAGGTTTGCAAGAATAATTTACAGTACAAAATTTGAAAGAAATATGTGATCTTTTTTTTTTTTTTTTAAAAGAATATCATCATATCAACCACAGGTTTAATCTTACAGTGAAAATATACAACAATATATATGTCTATGTACTATGCCTACATATTTTCTTTAAAATTTTTATGATGCTAAACCGGTATTATGAGTCATATTTCAGTGTTTAATACTGCTAGGAGCGGTATTTTTACTCCCTGCTCCCAAAGCTGGTACTGTAAGTCGTAGTGAAATTTAGAGAACGTGTTTCAAATTCTGATAGGCTGTTGGTTTTTTTCCTCACAATGTAATGTGGTAAGTTGCAAGGGAAAAAAAAAAACAAACAAACTACAAAAATGACCCGCCTTTAGGGAAATCTATAAGGAATTAATGATAAGTTAGTGCAACGGGACGTGTTATCTATTCCGCATTGGAAAAGGAGAACCTGTCTCATTTGGAACCCCAGATCTGTTGGGTTACGCACTTCTGTTGCCTAAGCCCCTCTCCTTGGAAGCACGAATATTGGGAGCGCTTGTGATGCGTTACGTCTTTCAGTAGTGCTTTTGATTGGGACGTGCAGCATTCCAAATTGAATTGCACACTTGGGAATCTGGTTTGGCTAACTTATCAGAAATTCTTGTAGGAGTATCCTTAAAACTTTCCGCATCTCTGTGAAGTGTTGATAAAATGCTTTATAGTGTCTGCAAGCTGCTGTTTTACTCAACTTTCCTGAATTTCAAACATCTATATTTTACTCTCTTATATGCTTTTAACTAAGGTATAGTAGATGCATTTTTGCTTCAGTACTAATTCGAAATGTAATATTCATTTCTTTAGAAGACATTTTTGTTGTTGTGCATGCCTAGTGTTTTGTATGTTGTATATTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCGCTGCCTGTTATTAAAAG
Seq C2 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000030196:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.330 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]