RnoINT0090153 @ rn6
Intron Retention
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105763422-105764288:+
Coord C1 exon
chr15:105763422-105763475
Coord A exon
chr15:105763476-105764134
Coord C2 exon
chr15:105764135-105764288
Length
659 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
ATCGAATTCTTCCCTTGCAGGCC
3' ss Score
8.5
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCACTGAAGCGACCTCTCGAAGCAACTGTAGACCTG
Seq A exon
GTACTTTGACCTTTCACCTTTCGCTTTGCATGTAGCTTTTCAGAGAACCAGCTGAGATTTGTATGTAAAATACTGGTTGCAGCCAATCATTATTATTAATTTTAAAGTGGAGGATTTCAATAAGGTGTTTAGTCATCTCATTTGCATACGTAATCTGGGAAATAAATATTAAATCTAACAAAATTTTAATACCTTTTCCAAAAGGAGTGAAGCAAATTTAAATTATGTGGCTCAGAGAAATGCTCATTGTAATTCTTATTAACCTTTAAATTCAAGAAACTGCCATTCAGTTAAAGAATAGATATTAATAATAACACAAATGTTCCTTTTTCCCCCTTAGTGTAGTTTAACCCGTTTAAAAAAAAAAAACTGAAGCCATTTTTTTCCATTGTTGCTTGATAGCTTTTCTTTTCCTTAGTTGAGATGCTACTGTTTTTTGGGTTACAGAATTCATGCTTCCGCTCTCAATAACAAACTCTCACTCATTCAACATTGCCGCTGTTTAAATTAAGGTGCATGGCAGAGGCATCTCCTTAGCTGTCGTTTTTTTAAAGAGAGAAAGGAAAGAAAGAAAGAATGTTGCACTTGGTGATCTCTGTGGACCTGGAGCCCACCCTTGCGTTAAGTTGGACACATCTTATCGAATTCTTCCCTTGCAG
Seq C2 exon
GCCTTCCCTCCCGGTGCTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGAGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTTTGACCAGTGCGCAGTTGCAGCAACACACGGCGTTCATTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737:ENSRNOT00000014300:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCGACTGCCAAAGCAC
R:
CTGTGGGAATGAACGCCGTG
Band lengths:
207-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]