MmuINT0096307 @ mm10
Intron Retention
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120395712-120396604:+
Coord C1 exon
chr14:120395712-120395765
Coord A exon
chr14:120395766-120396450
Coord C2 exon
chr14:120396451-120396604
Length
685 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
ATCGAATTCTTCGCTTTCAGGCC
3' ss Score
7.2
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCACTGAAGCGACCTCTCGAAGCAACTGTAGACCTG
Seq A exon
GTACTTTGACCTTTCACCTTTCGCTTTGCATGTAGCTTTTCAGAGAACCAGCCGAGATTTGTATGTAAAATACTGGTTGCAGCCAATCATTATTATTAATTTTAAAATGGAGGAATTCAATAAGGTGTTTAGTCATCTCATTTGCATATGTAATCTGGGAAATAAATATTGAATCTAACAAAATTTTAATACCTTTTCCAAAGAGTGAAGCAAATTTAAATTATGTGGCTCAGAAAAAATGCTCATTGTAATTCTTATTAACCTTTAAATTCAAGAAACTGCCATTCAGTTAAAGAATAGATATTAATAATAACGCAAATGCCAAATGCTCCTTTCTCCCCTTAGTGTAGTTTAACCTGTATTTATTAAAAAAAAAAAAAAAAAAGCTGAAGCCATTTTTTCCATTGTTGTTGCTTGGTAGTTTTTCTTTCCCTTAGTTGAGATGCTACTGTTTTTGGGTTACAGAATTCATGCTTCCGCTCTCAATAACAAATTCTCACTCATTCGACATTGCCGCTGTTTAAATTAAGGTGCATGGCAGAGGCATCTCTTTAGCTGTCATTTTTTTTTAAAGAAAGAAAAGAAAAGAAAAGAGAAAGAGAATGTTGCAGTTGATGATCTCTGTGGAGGTGGAATGCAAGCTTGCTTTAAGTTGGACACATCTTATCGAATTCTTCGCTTTCAG
Seq C2 exon
GCCTTCCCTCCGGGTGCTCTTCATCCCTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGGGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTCTGACCAGTGCGCAGCTGCAGCAGCACACGGCGTTCATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139:ENSMUST00000088419:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTGCCAAAGCACTGAAG
R:
GGGGATGAACGCCGTGTG
Band lengths:
198-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types