GgaINT0123096 @ galGal3
Intron Retention
Gene
ENSGALG00000016890 | A3F958_CHICK
Description
NA
Coordinates
chr1:149566057-149566914:-
Coord C1 exon
chr1:149566861-149566914
Coord A exon
chr1:149566211-149566860
Coord C2 exon
chr1:149566057-149566210
Length
650 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
ACTAACTCTCTTATTCACAGGCC
3' ss Score
8.45
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
Seq A exon
GTACTTTGACCTTTCACCTTTTGCTTTGCATGTAGCTTTTCAGAGAAGCAACTAATGAAATTTGTATCGCTTTCTTTTAAACATCAACCGGAAATGATTTCACATACTCTTAATTTACCGGAAACTCAGTACCGTATTTATCCATCTCATTCTCATACGTAATAAACGCAGACAATTTAGTTTGGTTCCTAACACGGTTTCATTTTTAAATACCTCCTCATAAAAAAGTCGAATTGAGATAAAACTGCTTTTGTAATTGAAAACGCTTAACATAATCCATTAATCTGTATAATAATAGGAAACAGTATTTCAATTAAAAAAAACCAAAAAACAACCCATACTTGGCAATGAAACACAAGTGGTTTTTTCTCCCTATGGTATCTGAAAACCTCTTTCAAGGAAATGCCATTTTCGTTGCTTTAAAGGCCTTTCTTTTCAGTAGTTGTGCTGCTACAGTTTTAGGTTAATAGTACCATGCTTTTGCTATCAATAACAAAATTTCACTCATTTTACATTGCTGTGCTTTGAGTTAATATGCATGGCGAGGCATCTTTAGCCGCTTTAAAAATAATAAGTTTTTGTATTTTTGTATATGTTTGCAGACAACGCCTTAAAAACGACTCCCTTTTAACTAACTCTCTTATTCACAG
Seq C2 exon
GCCTTTCCTCCCGGTGTTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTGCCAGTGCCGTTTTCAATCCCAGTGTCTTGCACTATCAACAGGCTCTTGCCAATGCTCAGTTGCAGCAACATGCAGCGTTCATCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000030196:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGACTGCCAAAGC
R:
GTCGGGATGAACGCTGCATG
Band lengths:
206-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]