BtaINT0090411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78409040-78409887:+
Coord C1 exon
chr12:78409040-78409093
Coord A exon
chr12:78409094-78409733
Coord C2 exon
chr12:78409734-78409887
Length
640 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
ATCCGATTCTTCACTTCTAGGCC
3' ss Score
8.8
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCATCTGTAGACCTG
Seq A exon
GTACTTTGACCTTTCACCTTTCGCTTTGCATGTAGCTTTTCAGAGAACCATCGAGATTTGTATTACTTGTAAAATATCGGTTGCAAACAATCATTATGTTTAATGAGAAAAATTCAATAAGGTGTTTAGCCATCTCATTTTCATATGTAATATGTGGAATAAATTAATCCTAACAAATTTTAATACCTTTTCCAAAAGAGTGAAGCAAATTTAAATTACTTGGCTCGTAAAAAATGCTCATGATAATCCTAATTAACCTTTAAATTCAAGAAATTGCCATTTTTAGTTAAAGAAAAGAATAGGTATTAATATTCATAACACAAATGCTTCCTCCCCCTCCCCCCCTTAGAATAGTTTAACTCATTTTAAAAGCTGAAGTCATTTTTCGCTGTTGTTGCTTGATAGTTTTTCTTTTCCTTAGTTAAGATGCTACCGTTTTGGGGTTACCGAAGTCATGCTTTCGCTCGCAATAACAAGTTCTCACTCATTCGACATTGCCGCTGTTTAAATTAAGGTGCATGGCAGAGGCATCTCCTTAGCTGTCATTTTTTAAAAGTCTGTTGCGATTGATGATCTCTGTGGACACTGAAGGTGTGTTTACTTTGAGTTATACATGTCTTATCCGATTCTTCACTTCTAG
Seq C2 exon
GCCTTCCCTCCTGGTGCTCTTCATCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGTGCGAGCACCGTGTTTAACCCCAGCGTCTTGCAGTACCAGCAGGCTCTCACCAGTGCGCAGCTGCAGCAGCACACCGCGTTCATCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313:ENSBTAT00000030532:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.986 A=NA C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGACTGCCAAAGC
R:
GGATGAACGCGGTGTGCTG
Band lengths:
202-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development