GgaINT0123096 @ galGal4
Intron Retention
Gene
ENSGALG00000016890 | MBNL2
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144597391-144598248:-
Coord C1 exon
chr1:144598195-144598248
Coord A exon
chr1:144597545-144598194
Coord C2 exon
chr1:144597391-144597544
Length
650 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
ACTAACTCTCTTATTCACAGGCC
3' ss Score
8.45
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
Seq A exon
GTACTTTGACCTTTCACCTTTTGCTTTGCATGTAGCTTTTCAGAGAAGCAACTAATGAAATTTGTATCGCTTTCTTTTAAACATCAACCGGAAATGATTTCACATACTCTTAATTTACCGGAAACTCAGTACCGTATTTATCCATCTCATTCTCATACGTAATAAACGCAGACAATTTAGTTTGGTTCCTAACACGGTTTCATTTTTAAATACCTCCTCATAAAAAAGTCGAATTGAGATAAAACTGCTTTTGTAATTGAAAACGCTTAACATAATCCATTAATCTGTATAATAATAGGAAACAGTATTTCAATTAAAAAAAACCAAAAAACAACCCATACTTGGCAATGAAACACAAGTGGTTTTTTCTCCCTATGGTATCTGAAAACCTCTTTCAAGGAAATGCCATTTTCGTTGCTTTAAAGGCCTTTCTTTTCAGTAGTTGTGCTGCTACAGTTTTAGGTTAATAGTACCATGCTTTTGCTATCAATAACAAAATTTCACTCATTTTACATTGCTGTGCTTTGAGTTAATATGCATGGCGAGGCATCTTTAGCCGCTTTAAAAATAATAAGTTTTTGTATTTTTGTATATGTTTGCAGACAACGCCTTAAAAACGACTCCCTTTTAACTAACTCTCTTATTCACAG
Seq C2 exon
GCCTTTCCTCCCGGTGTTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTGCCAGTGCCGTTTTCAATCCCAGTGTCTTGCACTATCAACAGGCTCTTGCCAATGCTCAGTTGCAGCAACATGCAGCGTTCATCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000042993:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0273412=Dak2=PD(18.0=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGACTGCCAAAGC
R:
GTCGGGATGAACGCTGCATG
Band lengths:
206-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]