MmuINT0096310 @ mm9
Intron Retention
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120788122-120795826:+
Coord C1 exon
chr14:120788122-120788385
Coord A exon
chr14:120788386-120795672
Coord C2 exon
chr14:120795673-120795826
Length
7287 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATCGAATTCTTCGCTTTCAGGCC
3' ss Score
7.2
Exon sequences
Seq C1 exon
GTATGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACAGACTGCCGCTTTGCACACCCGGCAGACAGCACCATGATCGACACAAACGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
Seq A exon
GTAAGTGCGCCCGCCGCGCCCGCACTGCTGCGCCTCCCAGGCCGCGGGTGGTGCTTGCGGGTGGGAAGGAGCTGTGCCTCCGGGCAGCTGGGAGACAAGGCTGCCATTCCCGCTGCTCCGCTGCCTAAGCTCTGTCGTCATCCCCCACCCCTTCTTGTTTTGTTCTGTTTTGCCCTTCCTTCCCTTCACAATAACTAAATCCCCAAGGTTCAGGGAACCCAAGCTGTGAGCTCTGTCCCCTCTGCAATCTGGTCTCCAAACCTCCCCCATCCTTACTAGGATCATGGGTCTAGGGCCTTGCAGTGAACCAGGAGACAAAGCAAGTGGTACAGCCCTATGCTACAGTCAGTTAGGGGGGAAAGGGGTAGCCCTCAGAAATGCCCAGCAACCAGTGACCCCGTCGATCACTAGCTTCTCCTCCCCCCATTTCCCCTTGGCTGGGCTGCCTGCCAACAGGTCAGGGCGAGTACAAGCACAGCAGCCACTCAGGAAAGGATGAAATGGAACTGAGCTAGCTGGTGCTAAAACGAACGACCTAGAAGACCTCTAACCCAGGCTAGCCCTTTAACTCTCCTCACTGTCCCTCAGGAACCAATGCTGCTATCTCTCCTGAATCTCACAGCCTCCTCGGCCACAGGAAGCATTGTCATTTTGACCGTCTGGGAGCCTATAAAGACTCCAGAATCTTGTCTCACCTAGAGTCTCGGAATCAGAAGATTTAGGGCCTGGAAAGACAGCTCAGTGGTCAAGTGTGGACAGTCTTTGGGAGGACTGGAGTTGGCTTTCCAGCATCCACATCAGGTGGCTCACAACATCTGTAACTCCAGCTCCAGGGGAGCTGGTCTGGCTCCTAGTAAATGTACATCTTCAGACACAGACACACACATACACATAACATTTAAACGCCCCCCAGGTGTTCTGTATGCACGCTAACATTTGAGAATCACATGCCCAGACCACTCCTCGGGCTCGGTTGTATTCAGGAATCAACTGAAGGGTTTGGGAAGGATCTACCGTTGATGCCTAACCCTATAGCAGCTGGTACAGTGCTATGGTTTGGGAAGGAACCAGGCCCAGGCCCTCTGAATCTTTGGGGCGACTCAACTCCAGTGCACACCCACAGCTGAAAACCAGGGCACTAGGTTGCAGAGATTTTTTTAATGAATTTACTTTAGAAATCTTTACATGTACAGTGGGCACATCACTCGCACCCATTCATAGAAACCACTTAGAGCCTGCCAGCCCTCGGCACCTGCTGGGTGGGGTGAATGAAGGAGGCTGGTTGCTTTGCCCTTCAGGAGCTTGGCATGTAGAGTGTGAGCAACTGTGCTTGTCAGCCACAGCGTGGGAAGCATGGTGGGCTCCAGAGAGAAGGAAGGACACAGAAGCGTACCCTCCCTGGGCAAGAATAGATAGGACTTCAGAGATGAAAGGCACCTGAGAGTGTAGTCTAGGTGCTGGAGAGATGGCTCAGTGCTTATAAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTCTATCCCAAGCACCCACATAGTTCACAACCATCTCTAACTCTGGTATTAGAGCACGCAGCGCCCTCTTCTGGTCTCCACGGGCACTGTAAGTGGTTCAGACAGTCTCCATTCCTGTTCACGTGGGGCCAAATGCATCCACATGAGAGGAAAATAACTCCAATGAAGGGTTTAGCGGAAGTGGAAACCCTAAACCTCAGTATATTTGGGGACAAAGTGGAGGCATGCAAAGATAAAAACACATAAATAATTCAACCTATATGAAAATGAATTATCTTTAGAGAAAATGAGCCCTTTAAGTCTGTGAGTGTAGAGGACTCGGTTTCCATCTACTTAATGAATATCTTATTCGGTGAGAGTCTTCTCTGTGGTTAGTTTTTCAGACCAGCCCCAATTTACTGCTCTTTGTGTTGATTCTTGGCCAGCAAGGTCATGTTCCCACACGACATTCATTGTATAAGCCACACCAGGGACTTAGGGCACTCCCTGGCCTAACCAGGACTCTGCTATTGAGACAGTAGCTTAACTGGCCAAGTTGACTTTTTCTGCATCATGTAACACCTTCAAGGAAGAGAGAAAGACAGGGCTTGGGAATGTTGGGGACGGCTACCAGGTCTGTCTCCCCTTTCTCCCTTCCACCCCCCCTTGGCTTGTCATTTCTACTCTATGAGACCAACATCTCCCCATGACACAGCCATCTGTAGGGATATATTCTTACATCTGATGAGAGAGGAAACAATGTTTCAACAGAGGCTCTGATTAAAGGCGGGGGTGGATCACTGCCATTGTCTTGGTGGCTACATCTCTATGGTCAAAGTGACAGAAGCAGATTACCCTGGGCCACAGTGGCCCAGCTTTAGACACGATGAGCTCTGGAGATGAATCTGGAAACGTTTGTTCCTCTCACCCAAATACCTGTGAAGATTAAAAACACGGTAGTCACCGTGACTATCAAGCTCACCCCCACCTTGTCATGCTATGTTTATACGTCGTCCTCGAAGTCGGAGTTCCAATACACACAGCTAATACCAAATCCAGTCCTGAAGGGGCAGTGTGCAAATCTGTGTCAGTGGTAGGCGACTCAGGGTGGTGGAGATAGGAGCAGAAGTGTCCATTTACCTAAAGCCCCACAGTGTGAAGGCACAGCTGAGCTCTGCCAGGGGCCCTCCTCCACGGTCTCACGTAAGCTCATCAGAATGCAGGAAGATTACTGCAGTAGATGCTGCGAGAGTCAGTTACCATAGTTTCTTGGATTGTTACACTGTGCCCAAATTTGGAGTGCTGAGCAGTCGCAGGATTTCGAAGCATCTTTGGAGGCGACCGAAAGCAATGTAGTTTCAGAACAATGCCAGCGCCTCTGTGACAGTGATGGGAAGATTACCGAATCTGTCATATCTTTCCAGTTAATGTGAGGGGCTCCTTTGAAACCAGCCTTGGTATAGTTTGATGAACCTTACAGGCAAGATTACCCAGAACAGTGCAGAAAGTCTATTATTCTATTTCCTTATTTAGAGGACAAATGGAGAGCTGGGTGCAGCTGAAAATGCTAACATTCCATTCCCCAGACTTCCTGAGCCGAAGACAGAGCGCTTCCATGGTGTAGGTTCTTATTATTGTCCAGGGATCTTCCCCCTGACTTTAAATAGTCAGGCATTACGAAGGAATTTAAAGCTCCGACTCTTGAAAAGAAGAGGCATTTATCTCCATTTGAGCCTTATTCTTTCATAATTCCTCTTAAAATATGAGCATCTCTCTCACGAGAATTTTCCAGACCTAAGAGTAAGCTTGTCGGAGGTGCCCTTTGCTAGTTTTAACACAAAGGGTATTTGATCTTCATGTGTAGTCTTTGTTCACATAAACCAAGATGGATGGCAATGGAAAGAACTGGTAACGGGACAAGCTGCCGTTCGCCAGATAAGTTTCAGTGGTTCTGGAAAACACTCACCGGAACTCCAAGCCCACGCTTCTGTCTGCCTCATTTTATGACCAGTGAGCCAGCACTTCTGATTGTTGCCCCTGGCTCTCCCCACCTCCTCGATCCCCACCTGTGATGCTGGCCTGGACAATTGTTCTCACCTTGACCTGTACTGTGATGGTGCCTCGACTCTGAAAAAGAAATCTCGGCCTCTCATAAAGTCTTATCACTGGTGTCTGTCCATTCAGACCTAGACCATAGAGGATCAGTAAGAGAGACAAGGCTAGCAAGAAAAAAGACCAAGTGTCTGGCGTGCAGTGGGGTTCTGGTTAAATTGCCCTTTCTTGCACTGGTGCCAAACAGGCTCCTAACACACCCGGGACTGCTCTATCCCTAAGGTGAGGTCTGAGCCTGAAGGTGAACAGACATTCTCACCTGGTTCTGTAGCTGTATGCCAGCAAGCCTGTGGTGACATGATTGTCCATGTGTGTGCTTTATGCACATTCTATAAAGCCTTAATATGTATGAAACCCTTCATATTTCAAAACCTCACATGCATCTTAGAAGAAAATTGCATCTAATAAAAGAAATATACTGTGCAGTGGAAAAGGGAGAAATGTCACTATTCTTACTTTACATCAGCTCCTAAGTTACTCTAAAGTGTAAAAGTCAGGTTTTAACAACCTAAAAGAAAAATAAACACAGACCATTAAACATCCAAAAGACTGCCATAAAAAGAAATATTAAACAGTACTTATTCTGCTTGGAAAACTCACTAAAGGATGCTCTGTTGCATCAAAGTTGTGTTCCTGTGTACCAGCCTTAATGGAAGTCAAAAAAAGACCTGTCCACTAGGAAATTTGTTTCCTAGACCCCAAAGGCTGGGAAAGTAGGAAACTGGAGACTGAAAGTTAAGGAGAGAATGATCTCGGCCTCTGCCAGCTGATGAGCATTCCCAGTGAGAGAGTAGCCATGGAGTCTTCAGTGAACTAAGATTAGAGAAGCTCAGAAACCAGAGCAAGCCTGGAAGGGCCCACGGGAGGGTGCGGTGAGCAGTCAGTTGCTGCCTGATGACCCGAGGTCAAGCCCCGGGATCCACATAGTGGGAGGATGACTGTCTCCCACAGGTCATTCTCTGGTGGCCCCACACGTGCCATCTTGCACATGTGTAGAGGTGTACACACACATCAGTCAATGAAATCAAGCCAACCCTGCGTTAGTTAACATTGTGAAACCGTACAGGAAGGAGAGATAACCAGAATTAAGTCGTGGAAGTTTATTGAATTTATATTTAATAATATCCAGGATATCGCACTGTGGTCCATGCTTGTAGTCCTGGCAATCTGGAGGGCTGACGCAGGAGAATTACTGTGAGTTCAAGGCCAATCTGGGCTAAAAAGTGAGGCTTTGTCTCAAAAACAAAAACAAAAAGAAATCTCTAAGAGTTTGGGCTGTTTTTATTTTTAATATTCCTTTTGTTTTTTTGTTTTTTTAATCAGTCCCCAGTATTCAGGGAACGTTATCCAAACTGCTTTCTAGAACATTCTCTTCCCTGTTGGGGATTCCCTGCCTACAGCTCTTTCCACCTTATTTCTAGACTCTTTCTCCAAGTTGCACAGCTCCTAAGCTGTCTTCTCTCACATTTGTTTTTGTTTTGTTTTGTTTTGTTTTGCTTTGTTTTGTTTTTTTATCCTGAGTCATGGAATGATGGGCAACTCTACCTTTGCCAAGGAAAACATCACTGATTGTTCCTGTCTTGAGGGTGAAGCTCCATCTCCCTTCCTTTCAAAGACCTCCGTTCTCCCACGACCTTCAGACTGAATTCTATTGGACAAACCTTGGGGATTTACCTATTGTTCTCATCATAAAGGGGGATGGCCATTGTTCCCATGCGCATTGAAGCTGCTTCCTGGACCTCCTTACTTTCACAGAATCCTATCCTAGAATTGTTTCACCTATGAACAACCAGAAAGAAGAGATTTTTTTTTTTCCATTGAGGTCTAAATCAATCCATAGCCAATACTCTTGGTTGTTTAAATGAAGCCATCTTCCCAGAAGTACTGGTGTAAGTTGAAGGCAGCGCTCTGCCTATCTGAAGGCAGTTCCCTGCTAGTTTAGCTGCTTGTTCTAGAGAAAGTCCCACTTGCCATCAACCGGTTAACCCCTGATCGTAGCTAAAAGTACCGATAGCATTACTAAAGAGAAATGCCTGTAATACCCAACGACGTGACATGCCTTTTGTAGAGGCTACTTTCTTAGTATATACTCTGGTAAGTTGTTTGAAATACATTATAATTTCAAATGTAGTAGAAACAGAACGGATGATAAGTTAGTATTTTGAAATGAAGCACAGTAAAAGTGAAACACTGGGGAAGTTCCTGTTTAAATTCAAATTGTCCAAGGTCTGGAATGTTCACCCACATGCTGAGACCCACCCTACACCCTAGCAGAATGAAGACAGGAACTGAGGCAATTTCCCATGTGATTCAGCCAAAAAATAACGACCCAAACCCAAACCGTTTTGAGTAAATAACCTTGTGTTTGAATATTTTTTGCCTGAATTTTTTTTTTGTCTCAGTTTGCCACTTCATTTTGTTAGGTTAATCTGAATCAAAACAGAGCTAAATGAAGATTTTTTTTTCAAATTGGAATGTACTTGATTTCTTCATTATTTTATATCAGAACTAACTTATCAGATGTTCTTCAGCCCTATGGTCCTTAAAAGTTTTGCATCTCCCCCACCCCCCCCCCACTCCCGAAGCAATATAAAAAAGTGCTTATGGTGTGTATGCAAGCTGCTGTTTTAATTAACTTTCCTGAATTTCAAACATCTATATTTTACTCTCTTATATGCTTTTAACTAAGGTATAGTAGATGCATTTTTTGCTTCGATACTAATTTAAGGTGTAATATTCATTTCTTTAGAGAACATTTTTGTTGTTGTGCATGCCTAGTGTTTTGTACGTTGTATATTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCGCTGCCTGTTATTAAAAGACTCAGTCGACTGCCAAAGCACTGAAGCGACCTCTCGAAGCAACTGTAGACCTGGTACTTTGACCTTTCACCTTTCGCTTTGCATGTAGCTTTTCAGAGAACCAGCCGAGATTTGTATGTAAAATACTGGTTGCAGCCAATCATTATTATTAATTTTAAAATGGAGGAATTCAATAAGGTGTTTAGTCATCTCATTTGCATATGTAATCTGGGAAATAAATATTGAATCTAACAAAATTTTAATACCTTTTCCAAAGAGTGAAGCAAATTTAAATTATGTGGCTCAGAAAAAATGCTCATTGTAATTCTTATTAACCTTTAAATTCAAGAAACTGCCATTCAGTTAAAGAATAGATATTAATAATAACGCAAATGCCAAATGCTCCTTTCTCCCCTTAGTGTAGTTTAACCTGTATTTATTAAAAAAAAAAAAAAAAAAGCTGAAGCCATTTTTTCCATTGTTGTTGCTTGGTAGTTTTTCTTTCCCTTAGTTGAGATGCTACTGTTTTTGGGTTACAGAATTCATGCTTCCGCTCTCAATAACAAATTCTCACTCATTCGACATTGCCGCTGTTTAAATTAAGGTGCATGGCAGAGGCATCTCTTTAGCTGTCATTTTTTTTTAAAGAAAGAAAAGAAAAGAAAAGAGAAAGAGAATGTTGCAGTTGATGATCTCTGTGGAGGTGGAATGCAAGCTTGCTTTAAGTTGGACACATCTTATCGAATTCTTCGCTTTCAG
Seq C2 exon
GCCTTCCCTCCGGGTGCTCTTCATCCCTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGGGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTCTGACCAGTGCGCAGCTGCAGCAGCACACGGCGTTCATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139-Mbnl2:NM_207515:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=0.321 A=NA C2=0.490
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: