MmuINT0100969 @ mm9
Intron Retention
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:23538220-23540137:+
Coord C1 exon
chr8:23538220-23538363
Coord A exon
chr8:23538364-23539652
Coord C2 exon
chr8:23539653-23540137
Length
1289 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTTTATTTTATTTCCCAGGTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
AAGCATCACCTTCTCTCTGGGAGATAGAGTTTGCTAAGCAGTTAGCCTCGGTAGCTGACCAGCCCTTTGAGAATGGATTTGAGGAGATGATACAGTGGACCAAGGAGGGGAAGCTGTGGGAGTTCCCAGTCAACAATGAAGCAG
Seq A exon
GTGAGCGCTATGTCAGAAGCTCAGAGCAGTCCCCCCAGAGGTTATGTGGGAAGGTATCCCGTTTTACAGGGGAGATAGGTGCCTATGTGGATCTCAGAACACCGTGATAGCTGAGAGGAAATCTAGCACGTTCTCTTAAATTGTTTTAAAGACAGCTAGAATTTGATTCAGCTCTAGTTATTTGATAATAGAAATAAAGTAGTAAAATTAGGTGTCAAAAATGTGTCATCGGGCTTGGGGGTGTAGCTCAGTCAGTAGGGTGTCTGTCTAGTACACATGAAGGCCTGGGCCGGACCCCCAGGACCTCATAGACTGGGCATGGTGGCACACAGGTTTAATCCCTCAGTGAGAGGTGGGAGAGTCAGAAGTCTGTAGCCGTCCTCAGCAGCAGGGCTCACACTCAGAAGCTTGGGGACAGCCTTGGATGTCCGTCTTCACCTTTCACCATGTTTTCAGACAGGTTCTGTCTTGTTTACTGCTGTGTGTCAGGCTAGCTGACCCAGGGGATTCCAGCAGTTCTTCTGTCTTGCCTCCCATCTCTGTAGGGGCTGCACTGGGATTATAGAGTTTGCTCTGTTGCATCTTCGTTCTGAGAGTCACGTCAGGCCATCAGACTTGTGCAGCAAGCCATCTCCCCAATCGTGGACCTCACTTTTATATCCACTGTACAGTACATGGCTCAGGCTGTATTTGGATCATCTACATTTAGAGTAATTGTTGAGCCAGGTGTGGCAGTGCACACCTGTATCCTGGCATTTGGGATATGGAGACAGGAGTGTCAGAAGGCAGTGAGCAGGCAGGGCTCTGTGAGCTCCTGTCTGGAAAACAGAATAAAATGAGAAGTCTACAGAAGTCAGGATGTAGTTGGGCCCTGTTTTCCTTTTTGTATTTATCATTCCTGTTTTCTTCCCTTGGGTTACTTAAACATCTTCTTCATGGTTCTACCTTATCTTACTTTTAAGTAGGCATCGTATAACTTTCTTAGTAGTCTCCTCAGATGTTAACAGTATGGGTGAATGACAGTAGCTTCTGTCTTGAGAGACCTGAGATGTCCAAGTCACGGTGCGCTTCCATGTACTGTCCACAGCACCCTGGGAGGCGTTCCCTCAGTCCTCACGTTGTGCCTGGAAACTGACGCTCACAGTCACATCTGTTTGTTAAACTGCTGGCCAAACCAGGTCTCATCACACAGTTTATGCTTCTGCCGTGCTGTAATGCATCATTAATGCTAACCTTACGACATAGGCTTTCCATTCACAATCGTGTTACTCTTTTATTTTATTTCCCAG
Seq C2 exon
GTTTAGATGACGATGGCTCCGAATTCCATGAGCATATATTTTTGGATAAGTACCTGGAGGATTTCCCCAAGCAAGGACCAATCCGTCTGTTCATGGAGCTGGTGACCTGTGGCCTTTCCAAAAACCCATATCTGAGTGTTAAACAGAAGGTCGAGCACATAGAGTGGTTTAGAAATTATTTTAATGAAAAAAGAGATATTCTCAAAGAAAATAATATAGCGTTCACTTAACATCACAAAGAAAAAAATTTTATTTAAACTTGAAGATGTATATTAAAGCTAAATAGAAATTTTATCAAAATTCTCCTGTGTTGATCATTGTACCTGATGTGACTAACATAACTGTGAAATTACTTTTAACCCGAAATACATTCTTATTATGTATCTGAGAATTAGGGATACATCTAAGACAATTCTAACTTTTTTCATTAGGTGGCTTTGCTTCTTTGTGGTATATAATTGTTAGTGGTAAAGCTGATTAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533-Mrps31:NM_020560:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(16.2=100)
A:
NA
C2:
PF154331=MRP-S31=PD(23.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAGCCTCGGTAGCTGACC
R:
TCTTTGTGATGTTAAGTGAACGCT
Band lengths:
346-1635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: