HsaINT0166926 @ hg19
Intron Retention
Gene
ENSG00000217576 | THSD1P1
Description
thrombospondin, type I, domain containing 1 pseudogene 1 [Source:HGNC Symbol;Acc:31375]
Coordinates
chr13:52745293-52749911:-
Coord C1 exon
chr13:52749774-52749911
Coord A exon
chr13:52745384-52749773
Coord C2 exon
chr13:52745293-52745383
Length
4390 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCACATGTTTGTTTTTGTAGGAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
ACACATCACCTTCACTTTGGGATGTGGAATTTGCTAAATAAGCCACAGAAAATGAACATCCCTTCAGAATGGGTTTGAAGAGCTGATCCAGTGGATTAAAGAGGGGAAACTGGGAGTTTCCAATTAACAATGAAGCAG
Seq A exon
GTAAGTGTTAATTTCAGGGGTTTATAAAATTCATTGACTGAGATTATTTCTGCCAGATATTCACTTTTAGAGTGTAGATACTTAGATGAATTTCAAAACACTGGGTAGATATCTTCACGGTGTCCTAAAGACAGTAAGTTGCAGCAGAATGCATGCAATATAACAGAATTTTATAAAATTCAAAAACCAAATTTTGAATATACTTTCTTAGCTCTAAAGGTGATAAAAGTATAGAGAAAATGATCAACATTTCAGGAAGGCAGGGTAATTGAGTAGGGACACCCGGGGGCTTCGACAGTATTATCATTCTGTTCCTCAAGTTGGACGGCAGGTTCACAGGTGGTCATTTCATCATGCTTTTATGTTATTATATGTTGTATATATTATGCTATATGTTAGCTATATTATAATTATACATTATGTTTTGTTTGTAACAGTGTTTCATAATATTTTAAGGAATGAATGGAAATGGGCACATAACGAAGATATGCAGTGCCTAGCCATCAGTAGAGTCCCAGCATTATCACATTCCGAGATAATTCCTATACAAAAACAGCAAACAAAGGGCATGTTATCTAGAATGCAAAGCCCATCCATATTATAATAAACTGAGACAATCAAATAGGGAATCCTTCTTTTAAGGATGGCATTTTTTATATGCTTGGAAGTGTTTTGAAGCAGAAATTGGTTTTGAATAAATCTACTGCTCCTTATTAATAGGAACGTATAAGCTTGCTTTTAATGTCACTATTATCCCTGCCAAGAAATTAAAAATCCTGGAGGTAATATTGCTTATGAACTCACTTACTTATTAATGACAGGTGCATTTACCCTCTTAAGGGATGACCATGGGTATTTTAAAAGATAAGAAATTTGCTGAGAATTCCTTAAATTTTTCTAATTTTCACTTGCCAGTGAGGTCATTGTCCCTTTTTTGCAGGTAGCTTTGAAAGATGATGATATCTCCACAGCTGAGACCATGTTGTTAAAACATCCTTCATTTAACCATTTACACATTTGGTTCTAAAGTTCTTGGTTCTAAAGAATGTGTTATCTTGAGATTCTTGTCTTATTACTATTCTTAAAATTGCTCTAAAACTTGCTGAGGTAATCAGCTTTAAATTCTGTAAATACAGATAACAAAACCCTCTTAATCCTAAAGGTGCTTTTAAAGTTCATGTATTTATACATGTATGCAAGTTGCCTGTTAAACTGGGAAGATTTTATTCTAAGTAACCAAATCTTAAGGAGCTAAAGCAAACCTGTTTTATAAAATATATTAATTCCAGGACTAAGCAATTTCTGAAAACAGACTGATTTACTGTGCTGCTTAATATTTCCTCAAACTAGAATACAAGCGACGGTGGCAGAGGGAGGAAGTAACTCATACTAGGAGGAACAAACAGCTGCTGGAATATGCTTGTGGTTTAGAGCTTCTTTTAAAAATCCTGTCAGCTGCAAAACAAAGGAAAGACCAATATTTTCCACGATGTCAGTAACATCTATGAAGATGCTCCTTTTGAATGTGGTACAGAAAGTTGGAAAACACTTAGGCATGGTATCTGGCATAGTGCCCCTTAGGGAGCACTTCACATACAGACGGTCCGGGGCTTAGGAAGGTTTGACTCAGAATTTTTTGACTTTATGATGGTTCCATAGGCGATGCACATTCAGTAGAAACCGAACTTTGAGTCCCCATACACCTATCCTGTTTTTCACGTTCAGGACATTATTCCCATAAATTACATGAGCTATTCAACCCTTTATAATAAAACAGGATTTGTGTTAGATGATTTTGCCCAAATGTAAGTTAATGTAAGTGTTCTGAGTACGTTTCTAAGCTCTGATGCTCAGTAGGTTAGGTGTATTAAAGACATTTTGACTTACGATATCTTCCCCTCCCAATAAACCCATTGTAAGTCAAGAAGCACCTGTAGAGGTCTGCCTTTACCAATTTCAGCTGTGACAAATTTAATGTTCCTGTATTGCTTTTAAATTGGAGAGCAGCAGCAGGTCTGAAACAAATACTGCAGTTAGCTTTGTGTTCTTCACTATTTATTGAACAGTTCAGAGGGCAAGGAAACAAAGAGAAGCGCTCTGAGTGTGTCTTTGCTTGCCAGCTCTTGAATTGTTAACAGTTCTATACTGGCCTTCCTGTATTTTTCTCTCGTTTTTTCTGTTCTCTTCTCTTTTTGACTCTGTCTCAAAAAAATCAAGTAAAAATATCCCTTGGGAATACATAATGTTCATATATGGAAACCCTCAATGCCTTTCTTGCTACCTGTAGGGTAAACTCCAAAATCCTTAGCTTAGCATTCAGATTCCTCCATCAAACTGGGTTCCTAGGCCAGCTATTTCAGAGTTAATGTTACTCTTTTTCTGGGGGATAGTGTCTTGCTCTGTCACCCAGTCTGGAGTGCAGTGGCACAATCATGGCTCGCTGCAACTACCTCCTCCCAGGGTCCAAGCAGTCCTCTCACCTCACCCTCCCGAGTTGCTGGGACCACAGGCCTGCACCATGCCTGGCTAATTGGTTTTTGTATTTTTTGTAGGTTTTCCCCATGTTGCCCAGTCTGGTCTCCAACTCCTGGGCTCAAGGGATCCACCCCTTCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATTGCACCCAGCTGATGTAAATTCTTTGGTTCCACCCCACCACCATGTCTGATTAATTTTTGTATTTTTAGTAGAGACATAGAGTTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAATTGCTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCCAGAAAACATTAGTTTTTAAGAGGCAACAGAATGGTAAGCTGAAAGTCCTGGTTATTATTGTCAGGGGCCACAGAGAGATCAAGTCAGATAGGAATCAGTTGGATTTGATAAGGGGTTACTAGTGGCTTTGAGAAGATTAAGACTAGAGAGGCAAATATTTTTATATTTTGTGGCAAAGGAGATGCAGTCAAAGTAGAGATTGGGGAAAAGGTTGAAGAAAGTCTGCAAGGAGAAAAATCATCCATTGACTGCTTACTGCATGCCAGGTAGAGATCTAAATAAGCCCCAAACCATGGAGTGATCTTCAGTTTCTCTTATCCCACACGTTCACCCATTAGCAAGTCTTGCTGGTTCTAATATATTCCAGCTTATTGTATTTCTCTTCATCACCTCTGTGGCTAACAGCCTTTTCTAGCCTAGATTTAATGTAGTAGTTTCCTAAGAAGTCTCTGTTTCCAGTGCTGATTTGTTATAATGTATTCACCATACAGCAACCAGAATGACATTTTTAAAAAGTAAATTGGACCGTGTCTCTCTCCTACTAACAATGACCTTTCCATGGGTTTCCATCACACCTAAGGTCCAAATTCCTTGTAACAGCCTGCAAGGTACAAAGTGAGGCCCTTGAAGTAGCATCTTACAGCTTCTTTGCTCTCTTAGTTTGAGCCACACTTTCTGTTGATTGACTGTAACCCCATGTGAGTTGAGGGGCATCTGTATTCATTGCTTTGTGAGAATTAAACTAGGTTAAAGCTAAGTCAGTGACACATGCGGCTATTGAAATAATTTTACCATTTAAGAAAACTACCAAATCCCCAGAGTTTGTAGGCAGCTGGCAGAAAATAAAAGTGTTCCTGTACTTGCCCTTGATCTCCCTAATTGTGTAATCTCTTACATCATTATTTTTCCAGCTACCACACCTATATGTTGTGACTGCACAGGGTAAAAAAGTCTTAATCTCTCTAATGTTAACTCTTGATCAGTTGCCATAGCCATCTATGAGATTGTATCTGGGCTTTGAACAGAATGTTTAATTGCATTTTATTAGAGTTGTGTGCTATTGATAGAGGATAAGAGAGGGCCAGGTAAGCTTGATGGTGTATGTATTGATTGTCTTAACCTCCCTGAGCTCTAGATTTAACTTTTAGTCTTTTTTTTTTTGGACAGCTTCACATTTTCTAGGAATCTCAAATTCTATATGGAGTTTGAATCTTCTCCAAATTAGAAGGAGAAAATCTGTAATAGTCAATGTATATCAGTTAAACTCTTCAGAATATGTGAGATGATAATAATGACCATTTATTGAGTTCTATAGGCCAGGAACTAAATGCTTTACAGTACAGAGATACTATGTTAGATTGTCTACTTTTGGGAGGAGGGGCAGGAGAAGGGGAGATTTTCTTATGAGGAAAAACTCCAAGATTACATCCCTGTTATCTTTCCTCCAAATAGTTTCTGATAATAAGTTATTTGATTAAAAATTGTTTTAATTAGAATTTCATGGCTTTTTACAAACTGTTACTGACACTCCACATGTTTGTTTTTGTAG
Seq C2 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAATATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAGTTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-THSD1P1:NR_002816:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)