MmuINT0103339 @ mm9
Intron Retention
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:51888845-51889916:-
Coord C1 exon
chr7:51889729-51889916
Coord A exon
chr7:51888967-51889728
Coord C2 exon
chr7:51888845-51888966
Length
762 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCTGCCGTCACCCCTGCAGGCT
3' ss Score
9.39
Exon sequences
Seq C1 exon
TGGAGGGCATCGTGGGGCTGGAGCAAGTAAGCAGCCTTGGAGATGGCCCACCGGGAGGCCGCCCCCGCCGTGGAATGTTCCGGACTGTGGGGCAGCTCTACAAAGAATCCCTGAGCCGCCTCATGGCCACGCTCAGCAACACCAACCCTAGTTTTGTCCGCTGCATCGTTCCCAATCATGAGAAGAGG
Seq A exon
GTGAGTAGGAGGGAACTTGATGTGCTCTGTGCGTGGGGATGAGTGGCCGCCATGCCTGGGCTGTCTGCTTCTGTGACCTAAAGTTTCTGAGTGTCCACTGTGTGGCAGAAACAGAACTTGGGGACACAGTGGCAGAGAGACAAGAAGAGCCTGTTCCAGCTGCTCCTGTGCCCTCCAAGGAGCTAATAGGTGAAGGGAGGACATCGAGTTCTCACGCTTGCTGGTAGACAGGGCAAAGGGGGGGGGGGAGAGACTTAATAAGATACACATACAACCTGGCACCCCGAGTGAATGTTCAGGTGACTCTGAAGGTATGAGAGGAAGGTCACGTTGGCTTTTACCTAGCCAGGGAGTCAGAGAAAGATCCCTGAGGGGAGGTGACTGAACTGCATAGCCTAAGCACTTTTCCAACCAGAGAACGGCTTGTGCAAAGGCCCAGAGGCGGGTGGGAACATGGTGGGAATACGGAGTGGAAGAAGGCTGCGGTGATAGGAGGTGACACAGGCCTGTCAGTTCAGCACTAGGGACAATAAGATAGAACAACTGTTAAATTCAGGATCAGTCTCTTCTTATAGCACCAGTTCAAAGACAGTGTGGGCAACTTAATAACATCGTGTTTCAAATAAGTAAAAAGTGTGTTACTCAGCAATGAAGTTCCTTTCTAGAATCCCCCAGAGCGAGGCTGGGGTGTGGATCAGTGGTAAACACTTGCCACAGTGGCGCCCCTGGTGGCCACCACTGACCCTGCCGTCACCCCTGCAG
Seq C2 exon
GCTGGAAAGCTGGAGCCGCGCCTGGTGCTGGACCAACTCCGTTGTAACGGGGTCCTCGAGGGTATCCGCATCTGTCGCCAAGGCTTCCCCAACCGCATCCTCTTCCAGGAGTTCCGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739-Myh14:NM_028021:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGGGGCTGGAGCAA
R:
GCTGTCGGAACTCCTGGAAGA
Band lengths:
302-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: