RnoINT0096390 @ rn6
Intron Retention
Gene
ENSRNOG00000020014 | Myh14
Description
myosin heavy chain 14 [Source:RGD Symbol;Acc:1306821]
Coordinates
chr1:100634062-100635119:-
Coord C1 exon
chr1:100634932-100635119
Coord A exon
chr1:100634184-100634931
Coord C2 exon
chr1:100634062-100634183
Length
748 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCTGCCGACACCCCTGCAGGCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
TGGAGGGCATCGTGGGGCTGGAGCAAGTGAGCAGCCTTGGAGATGGCCCCCCGGGAGGCCGCCCCCGCCGTGGAATGTTCCGGACCGTGGGGCAGCTCTACAAAGAATCCCTGAGCCGCCTCATGGCCACGCTCAGCAACACCAACCCTAGTTTTGTCCGCTGCATCGTTCCCAATCATGAGAAGAGG
Seq A exon
GTGAGTGGGAGGTGTGCTCTGTGAGTGGGTATAAGTGGCTGCCATGTCTGGGCTCTCTGCTTCTGTCACGTAAAGTTTTTGAGTGTCCACTATGTGGCAGAAACAGAACACAGTGGCAGAGAGACAAGGAGAGCCTCTTCTGCTGTGTCCTTCGAGGAGCTAAGGATGAAGGGAGATCACCGAGTTCTCACACTTGCTGGTAGACAGAGCAAAAGGGGTACTGAACAAACTACACATACAACCCAGCTCCCAGAGTGAAGTGCAGGTGACTGAAGGCGTGAGAAGGTCACTTGGATTTTACCTAGCCAGGGAGTCACAGAAGGCTCCCTGGAGGGGAGGGGACTGAACTGATAGCCTAGGTAGTTTTCCAAGCAGGGAAGAGCTTGTTTTCCAAGCTTGTGCCTCTGTCCCAGAGGCGGGTGGGAACATGGTGGGAATAAGGGGTGGAAGAAAGCTGCTTGGATAGGAGGTGGCACAGGCCCGTCAGTTTAGCACTAGGGACAATAAGATAGAATAACTGTTAAGTTCAGTACCGATCTCTCCTATGGCACCAGTTCAAAGACAGTCTGGGCAACTTAATAACGCCGTGTTTCAAATAAGTAAAAACAGTATGTTGCTCACTAATAAAGTTTCTTTCTAGAATCCCCCAGTGAGAGGTTGGGGGGTGTGGATCAGTGGTAAATACTTGCCACAGGCCAGCTTGTGGCACCCCTGGTTGTTGGCACTGACCCTGCCGACACCCCTGCAG
Seq C2 exon
GCTGGGAAACTGGAGCCGCGCCTGGTGCTGGACCAGCTCCGTTGTAATGGTGTCCTCGAGGGTATCCGCATCTGTCGCCAAGGTTTCCCCAACCGCATCCTCTTTCAGGAGTTCCGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020014:ENSRNOT00000027132:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGGGGCTGGAGCAA
R:
GCTGCCGGAACTCCTGAAAG
Band lengths:
302-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]