MmuINT0103546 @ mm10
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54950052-54950653:-
Coord C1 exon
chr14:54950264-54950653
Coord A exon
chr14:54950179-54950263
Coord C2 exon
chr14:54950052-54950178
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTGCTCATTAATGCCTGCAGGCC
3' ss Score
5.88
Exon sequences
Seq C1 exon
GCACGCATCGAGGAGCTGGAGGAGGAGCTGGAGGCAGAGCGCACAGCCCGGGCTAAGGTGGAGAAGCTGCGCTCTGACCTGTCCCGGGAGCTGGAGGAGATCAGTGAGAGGCTGGAGGAGGCAGGCGGGGCCACATCCGTGCAGATAGAGATGAATAAGAAGCGCGAGGCCGAGTTCCAGAAGATGCGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCGGCGGCCCTGCGCAAGAAGCATGCTGACAGCGTGGCGGAGCTGGGCGAGCAGATCGACAACCTCCAGCGGGTGAAGCAGAAGCTGGAGAAAGAGAAGAGCGAGTTCAAGCTGGAGCTGGATGACGTCACCTCCAACATGGAGCAGATCATCAAGGCCAAG
Seq A exon
GTGGGCCCTCTCAGCAGCTCCCCTCCTCCCTGCCAGTCGTGGCCCTTTCCACATTCACCTTTCCTCTGCTCATTAATGCCTGCAG
Seq C2 exon
GCCAACCTGGAGAAAGTGTCCCGGACACTGGAGGACCAGGCCAATGAGTACCGCGTGAAGCTGGAAGAAGCCCAGCGCTCCCTCAATGACTTCACCACACAGCGAGCCAAGCTGCAGACAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752:ENSMUST00000081857:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.465
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(10.7=10.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGATCGACAACCTCCAG
R:
AGCTTCACGCGGTACTCATTG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types