BtaINT0097340 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21367507-21368371:+
Coord C1 exon
chr10:21367507-21367896
Coord A exon
chr10:21367897-21368244
Coord C2 exon
chr10:21368245-21368371
Length
348 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTGTCCCATACCGTCTGAAGGCC
3' ss Score
4.21
Exon sequences
Seq C1 exon
GCACGCATAGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGCACCGCCCGGGCCAAGGTGGAGAAGCTGCGCTCAGACCTGTCCCGGGAGCTGGAGGAGATCAGCGAGCGGCTGGAGGAGGCCGGCGGGGCCACGTCCGTGCAGATCGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGATGAGGCGGGACCTGGAGGAGGCCACGCTGCAGCACGAGGCCACGGCGGCCGCCCTGCGCAAGAAGCACGCCGACAGCGTGGCTGAGCTGGGCGAGCAGATTGACAACCTGCAGCGCGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAGCTGGACGACGTCACGTCCAACATGGAGCAGATCATCAAGGCCAAG
Seq A exon
GTGGGCCCGGCTCTCCTCTCCTCACCCTCTCCTCCCTCACCGCCTCGCAGGGTACCTTCCCTCCACTTCGTCTCTCTGCCATCGCTCGTATTCTCACTCCCTTCACCACCCTCTGGTCTCTCTCCGTCTCACCCTTGCACCCACCTTGCCCTCCCTCTGCGTCTCCATCTCCTCACCACCTCTCGCTTCTTTAATTCATGCACCCTCTTCAGATTGTGGCCCTCTAGCCCCGCCCGTCGCCTCCCCTATCCCCCCACCTCTGTGTCCTCCCCCACCTTGGCCCATCTTTCCTCCAATCCACCCAACCCCTCCCACATTCACCTCTCCCGTGTCCCATACCGTCTGAAG
Seq C2 exon
GCCAACCTGGAGAAGATGTCCCGGACACTGGAGGACCAGGCCAATGAGTACCGGGCGAAGCTAGAAGAGGCCCAGCGCTCCCTCAATGACTTTTCCACCCAGCGAGCCAAGCTGCAGACCGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=NA C2=0.930
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100),PF059116=DUF869=PU(31.4=36.9),PF0003816=Filament=PU(2.6=2.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF059116=DUF869=FE(27.5=100),PF0003816=Filament=FE(36.2=100),PF0003816=Filament=PU(2.0=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAACAAGAAGCGCGAGG
R:
CTCGCTGGGTGGAAAAGTCAT
Band lengths:
348-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development