GgaINT0132881 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:20322-20947:+
Coord C1 exon
chr19:20322-20711
Coord A exon
chr19:20712-20820
Coord C2 exon
chr19:20821-20947
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CCTTCCCTTCCTTCTTCTAGACC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GCACGGATTGAGGAGCTGGAGGAGGAACTAGAGGCAGAGCGGACGGGCCGGGCTAAGGTGGAGAAGCTGCGCTCAGAGCTGTTGCAGGAACTGGAGGAGACCAGTGAGCGGCTGGAGGAGGCAGGTGGTGCCACTTCAGTGCAGCTCGAGCTTAACAAGAAGCGGGAAGCCGAATTCCAGAAGCTGCGGAGGGACCTGGAGGAGGCCACATTGCAGCACGAGGCCACGGCTGCCACGCTGCGCAAGAAGCATGCTGACAGTGTAGCTGAGTTGAGTGAGCAGCTTGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTCAAGCTGGAGCTGGATGATGTCAACTCCAACACGGAGCAGCTCATCAAGGCCAAG
Seq A exon
GTAGGAGACTGAGGCCTCAATGGCAAAAATCAAGATGAGGCTAGATGGGACAGTTATTCTTTCACACTTCCCATGTTCCCATGCATCTCCCTTCCCTTCCTTCTTCTAG
Seq C2 exon
ACCAACCTGGAGAAGATGTGCCGCACCACAGAAGACCAGATGAATGAGCACCGCAGCAAGTTGGAGGAGGCTCAGCGCACTGTCACTGACCTCAGCACCCAGCGAGCCAAGCTCCAGACAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(34.9=88.4),PF0003816=Filament=PU(2.6=18.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTTGAGTGAGCAGCTT
R:
GTTCTCTGTCTGGAGCTTGGC
Band lengths:
252-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]