RnoINT0096512 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33614509-33615342:-
Coord C1 exon
chr15:33614953-33615342
Coord A exon
chr15:33614636-33614952
Coord C2 exon
chr15:33614509-33614635
Length
317 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTGCTCGTTAATGCCTGAAGGCA
3' ss Score
1.63
Exon sequences
Seq C1 exon
GCACGCATCGAGGAGCTGGAGGAGGAGCTAGAGGCCGAGCGCACAGCCCGGGCCAAGGTGGAGAAGCTGCGCTCAGACCTGACCCGGGAGCTGGAGGAGATCAGTGAGAGGCTAGAGGAAGCCGGTGGGGCCACATCTGTGCAGATAGAGATGAACAAGAAGCGCGAGGCCGAGTTCCAGAAGATGCGGCGGGACCTGGAGGAGGCCACGCTGCAGCATGAGGCCACAGCCGCGGCCCTGCGCAAGAAGCACGCAGACAGCGTGGCCGAGCTGGGCGAGCAGATAGACAATCTACAGCGGGTGAAGCAGAAGCTGGAGAAAGAGAAGAGCGAGTTCAAACTGGAGCTGGATGACGTCACCTCCAACATGGAGCAGATCATCAAGGCCAAG
Seq A exon
GTGGGCCTTCTCAGCACCCCCACTTCCCCTCACAGCCGTACCATCTCTTGCCCTTTAGTGCCCTTTGGCCTTCACCTCCTGTCTACCCTGCCTCTCCGTAGCCTTCACCCACATTTATCTACTAATCTTTCTTTAATGCATTTCCTTCTTCAGACTGAGTCCTTTCTACTCTATCCCACCCTCTTGCCTGTCCTCTGAGCACTCCCCCATCCTTGCCCTCTTTCCCTTCTTCTGGTCGGGGGGGTCCACACCCCCCTTTCCCTGCCAGCCCTGGCTCCTCCCACATTCACCTTTCATCTGCTCGTTAATGCCTGAAG
Seq C2 exon
GCAAACCTGGAGAAAGTGTCCCGGACACTGGAGGACCAGGCCAATGAATACCGGGTGAAGTTGGAAGAAGCCCAGCGCTCCCTCAATGACTTCACCACACAGCGAGCCAAGCTGCAGACAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.6=100),PF0003816=Filament=PU(10.7=10.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGATCAGTGAGAGGC
R:
CGGTATTCATTGGCCTGGTCC
Band lengths:
352-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]