GgaINT0132881 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:14921-15546:+
Coord C1 exon
chr19:14921-15310
Coord A exon
chr19:15311-15419
Coord C2 exon
chr19:15420-15546
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CCTTCCCTTCCTTCTTCTAGACC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GCACGGATTGAGGAGCTGGAGGAGGAACTAGAGGCAGAGCGGACGGGCCGGGCTAAGGTGGAGAAGCTGCGCTCAGAGCTGTTGCAGGAACTGGAGGAGACCAGTGAGCGGCTGGAGGAGGCAGGTGGTGCCACTTCAGTGCAGCTCGAGCTTAACAAGAAGCGGGAAGCCGAATTCCAGAAGCTGCGGAGGGACCTGGAGGAGGCCACATTGCAGCACGAGGCCACGGCTGCCACGCTGCGCAAGAAGCATGCTGACAGTGTAGCTGAGTTGAGTGAGCAGCTTGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTCAAGCTGGAGCTGGATGATGTCAACTCCAACACGGAGCAGCTCATCAAGGCCAAG
Seq A exon
GTAGGAGACTGAGGCCTCAATGGCAAAAATCAAGATGAGGCTAGATGGGACAGTTATTCTTTCACACTTCCCATGTTCCCATGCATCTCCCTTCCCTTCCTTCTTCTAG
Seq C2 exon
ACCAACCTGGAGAAGATGTGCCGCACCACAGAAGACCAGATGAATGAGCACCGCAGCAAGTTGGAGGAGGCTCAGCGCACTGTCACTGACCTCAGCACCCAGCGAGCCAAGCTCCAGACAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(49.3=53.1),PF0157614=Myosin_tail_1=FE(37.7=100),PF079267=TPR_MLP1_2=PD(97.7=97.7),PF059116=DUF869=PU(29.4=36.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(12.3=100),PF059116=DUF869=FE(25.8=100),PF0205011=FliJ=PU(42.7=81.4),PF0003816=Filament=PU(34.5=88.4),PF0003816=Filament=PU(5.4=16.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTTGAGTGAGCAGCTT
R:
GTTCTCTGTCTGGAGCTTGGC
Band lengths:
252-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]