MmuINT0104586 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98095629-98097221:-
Coord C1 exon
chr7:98097108-98097221
Coord A exon
chr7:98095783-98097107
Coord C2 exon
chr7:98095629-98095782
Length
1325 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ATGCCCCCTCTCCTGCCCAGGGT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GCCCCTGACGAGAGGAACTATCACGTGTTCTACTGTATGCTGGAGGGCATGAATGAGGAGGAGAAGAAGAAACTGGGCCTAGGCCAGGCCGCTGACTACAACTACTTGGCCATG
Seq A exon
GTGAGGCCCAGGTGACAAACTGGGGTAAATACCTTTCCTGGTTATGTAGGGCAAGACCAAACTTGGCAGAGTGGCACTGCACCAGCCCAGTCAGGCTTTGTCTGTGCCTTAAACAATGTGCCCTCACTTGGGCATATGTCCCTAGTGAATCCTTACCATTTCTCAAGGTCAACACAGAGCCTGGGGACACAGCATAGGAGCCACAGAGCCAAGCACATGGACCTGCTCACAATGGAGACTTTACAGGCTCCCGCTGGGCCTCCCAGGATGGAGGGAGCTGGTTGCTGAGGCCTCCAGGATTTGTTGATGGCAGGCTCTGGTGCTGGTTTCTGGTGCTCTGTGGCTCTGGGGCAGTGCTTCTCTCTTCCCCTTTGAGGGTTGATTGACCCTTTCACAGGGGTCACCTAAGGCCATTGGAAAACACAGATATTTGCATTACAATTTATAACTAGCAAAATTATAACTATGAAGTAGCAACAAGATATTTTATGGTTGGGGGTCTCCACAACATGAAGAACTTTATTAAAGGGTCGCAGCATTAGGACGGTTGGAAGCCACTGCTCTAGGGGTTGTGCACACAGCAGGCTAGGTTGAGAATTCCAACTCTATCTCCCTGGAGAGAACCTATTTGGGATTTAAGGTGTTGTGGGTGGGACAGGACCTTCTCTTCTGTAACTAGCTAGCGGGCACACTCACTCTCCCTCTGTCTCACACGCAGACATACCACACACCATGTATACCACGTACACCACATACCATGTACAACACATATACCACACATACACCATACACACACACTCAGACAATACACATATACCACACACACACCAAATAAACAGATACACCACACATGTGATACATTCCACACAAACACACACACATATGCACACACATGAGCACATACGTACGCACACCATACATACCACACACACAGGCACATGCACACGCACACACACACATGCACACATGCACAACTATACCACACACACCACACACACACTCCTGCACACACACCACACACATACTCCTGAGCAGGCTGTGTCTACACTTCCCCTCTGTGGTTCACGCATGGTGACAGTTGAAGGGAACTCCCCCAGGAGTGGGCAGCACCCTGGAGCTGTGTGGATCTGGGTAAGGTGTTGGTGCTGTGAGCTGTGGTGAAAAGGAGTGCTTGGGTGAGCTGTATAGTGTCCAGCTCTTACTCATGTCAGGGTGCCCCAGAGAAGACCACAGGACCATTCTACATATCCTGGGCATTGCCCTCCTGACATCCCCTGACACTTCCCTGTCCTCCCATTTTGTGCCATGCCCCCTCTCCTGCCCAG
Seq C2 exon
GGTAACTGCATCACCTGTGAGGGCCGCGTGGACAGTCAGGAGTATGCCAACATCCGCTCTGCCATGAAGGTTCTCATGTTCACAGACACGGAGAACTGGGAGATCTCGAAGCTTCTGGCTGCCATCCTACACATGGGCAATCTGCAGTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGACGAGAGGAACTAT
R:
CCTCATACTGCAGATTGCCCA
Band lengths:
268-1593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types